Publication

array(14 items)
   uid => 929 (integer)
   title => 'MuDoGeR: Multi-domain genome recovery from metagenomes made easy' (64 chars)
   abstract => 'Several computational frameworks and workflows that recover genomes from pro
      karyotes, eukaryotes and viruses from metagenomes exist. Yet, it is difficul
      t for scientists with little bioinformatics experience to evaluate quality, 
      annotate genes, dereplicate, assign taxonomy and calculate relative abundanc
      e and coverage of genomes belonging to different domains. MuDoGeR is a user-
      friendly tool tailored for those familiar with Unix command-line environment
       that makes it easy to recover genomes of prokaryotes, eukaryotes and viruse
      s from metagenomes, either alone or in combination. We tested MuDoGeR using 
      24 individual-isolated genomes and 574 metagenomes, demonstrating the applic
      ability for a few samples and high throughput. While MuDoGeR can recover euk
      aryotic viral sequences, its characterization is predominantly skewed toward
      s bacterial and archaeal viruses, reflecting the field's current state. Howe
      ver, acting as a dynamic wrapper, the MuDoGeR is designed to constantly inco
      rporate updates and integrate new tools, ensuring its ongoing relevance in t
      he rapidly evolving field. MuDoGeR is open-source software available at http
      s://github.com/mdsufz/MuDoGeR. Additionally, MuDoGeR is also available as a 
      Singularity container.' (1238 chars)
   authors => array(16 items)
      0 => array(3 items)
         last_name => 'da Rocha' (8 chars)
         first_name => 'Ulisses Nunes' (13 chars)
         sorting => 1 (integer)
      1 => array(3 items)
         last_name => 'Kasmanas' (8 chars)
         first_name => 'Jonas Colho' (11 chars)
         sorting => 2 (integer)
      2 => array(3 items)
         last_name => 'Kallies' (7 chars)
         first_name => 'René' (5 chars)
         sorting => 3 (integer)
      3 => array(3 items)
         last_name => 'Saraiva' (7 chars)
         first_name => 'João Pedro' (11 chars)
         sorting => 4 (integer)
      4 => array(3 items)
         last_name => 'Toscan' (6 chars)
         first_name => 'Rodolfo Brizola' (15 chars)
         sorting => 5 (integer)
      5 => array(3 items)
         last_name => 'Štefanič' (10 chars)
         first_name => 'Polanca' (7 chars)
         sorting => 6 (integer)
      6 => array(3 items)
         last_name => 'Bicalho' (7 chars)
         first_name => 'Marcos' (6 chars)
         sorting => 7 (integer)
      7 => array(3 items)
         last_name => 'Corrêa' (7 chars)
         first_name => 'Felipe Borim' (12 chars)
         sorting => 8 (integer)
      8 => array(3 items)
         last_name => 'Baştürk' (9 chars)
         first_name => 'Merve Nida' (10 chars)
         sorting => 9 (integer)
      9 => array(3 items)
         last_name => 'Fousekis' (8 chars)
         first_name => 'Efthymios' (9 chars)
         sorting => 10 (integer)
      10 => array(3 items)
         last_name => 'Barbosa' (7 chars)
         first_name => 'Luiz Miguel Viana' (17 chars)
         sorting => 11 (integer)
      11 => array(3 items)
         last_name => 'Plewka' (6 chars)
         first_name => 'Julia' (5 chars)
         sorting => 12 (integer)
      12 => array(3 items)
         last_name => 'Probst' (6 chars)
         first_name => 'Alexander J.' (12 chars)
         sorting => 13 (integer)
      13 => array(3 items)
         last_name => 'Baldrian' (8 chars)
         first_name => 'Petr' (4 chars)
         sorting => 14 (integer)
      14 => array(3 items)
         last_name => 'Stadler' (7 chars)
         first_name => 'Peter Florian' (13 chars)
         sorting => 15 (integer)
      15 => array(3 items)
         last_name => 'CLUE-TERRA Consortium' (21 chars)
         first_name => '.' (1 chars)
         sorting => 16 (integer)
   type => '0' (1 chars)
   keywords => '' (0 chars)
   year => 2024 (integer)
   affiliation => 1 (integer)
   link_paper => '' (0 chars)
   link_supplements => '' (0 chars)
   file_published => 0 (integer)
   journal => ' Molecular Ecology Resources' (28 chars)
   doi => '0.1101/2022.06.21.496983' (24 chars)
   preprint => '-1' (2 chars)