Axel Mosig

also refer to my new site in Shanghai

Contact
Research Interests
Publications
Software
Teaching (in German)
Links

Research Topics

Computational Biology, Algorithm Design, Comparative Genomics, Pattern Discovery, and Toponomics

Short CV

since Sep 2005	Postdoc at the CAS-MPG Partner Institute for Computational and Theoretical Biology, Shanghai (China) and at the Max Planck Insititute for Mathematics in the Sciences, Leipzig (Germany)

Apr 2004 - Aug 2005	Postdoc at the Bioinformatics group, Departement of Computer Science, University of Leipzig (Germany)

Feb 2004	Doctoral Degree (PhD) in Computer Science at University of Bonn
Jun 2001 - Dec 2004	Research and Teaching assistant in the Departement of Computer Science, University of Bonn, Germany

May 2001	Diplom (corresonds to Master's degree) in Computer Science at University of Bonn

Contact

Axel Mosig, Dr. rer. nat.
Departement for Combinatorics and Geometry
CAS-MPG Partner Institute for Computational Biology
Shanghai Institutes for Biological Sciences
320 Yue Yang Rd.
200031 Shanghai, P.R. China

Phone:
+86 (0)21 / 5492 0457
Email:
mosig (at) sibs.ac.cn

Publications and Theses

A. Mosig, K. Sameith, P. Stadler, fragrep: Efficient Search for Fragmented Patterns in Genomic Sequences, Geno. Prot. Bioinfo. 4: 56-60 (2006). 2006. [pdf] [ps]
Evolutionary Patterns of Non-Coding RNAs
A.F. Bompfünewerer, Ch. Flamm, C. Fried, G. Fritzsch, I.L. Hofacker, J. Lehmann, K. Missal, A. Mosig, B. Müller, S.J. Prohaska, B.M.R. Stadler, P.F. Stadler, A. Tanzer, S. Washietl, Ch. Witwer
Th.Biosci. 123: 301-369 (2005).
[ Publisher's Page]
Preprint version: [Abstract] [Postscript] [PDF]
[Supplemental Material]
S.J. Prohaska, A. Mosig, P.F. Stadler, Regulatory Signals in Genomic Sequences, Book Chapter. 2005.
A. Mosig, T. Biyikoglu, S.J. Prohaska, P.F. Stadler, Discovering cis-Regulatory Modules by Optimizing Barbeques, Submitted. 2005. [pdf] [ps]
M. Clausen, A. Mosig, Approximately Matching Polygonal Curves with Respect to the Frechet Distance,
Accepted for Special Issue on the 19th Europ. Workshop on Comp. Geom. of Computational Geometry: Theory and Applications., in press. 2004.
[abstract] [pdf]
A. Mosig, M. Clausen, A Generic Framework for Geometrically Matching Molecular Shapes,
Nineteenth International Course and Conference on the Interfaces among Mathematics, Chemistry & Computer Sciences (MCC), Dubrovnik, 2004.
[abstract] [pdf]
A. Mosig, Efficient Algorithms for Shape and Pattern Matching,
PhD thesis, Univ. Bonn, 2004.
[abstract] [pdf]
A. Mosig, Matching Polygonal Curves using Group Theory,
Poster presented at the NATO Advanced Study on Computational Noncommutative Algebra and Applications, Tuscany, Italy, 2003.
[abstract]
M. Clausen, A. Mosig, Approximately Matching Polygonal Curves with Respect to the Frechet Distance,
19th Europ. Worksh. Comp. Geom., Bonn, Germany, 2003.
[abstract]
A. Mosig, Algorithmen und Datenstrukturen zur effizienten Konstellationssuche (in German, Algorithms and data structures for efficient constellation searching),
Master's thesis, Univ. Bonn, 2001.
[abstract]

Teaching (mostly in German)

At University of Leipzig

Lectures November 13 and 20, 2004: for a gentle introduction to Hannenhalli-Pevzner Theory, refer to the nicely written paper by Anne Bergeron. A complete treatise can be found in Pavel Pevzner's book.
Material for the lecture on Protein Threading (May 18, 2004)
Material for the lecture on Geometric Hashing (May 25, 2004)
Literature links for the Graph Theory lectures on May 19, May 26 and June 30

At University of Bonn

Übungen zur Grundvorlesung Informatik II, Sommersemester 2003
Seminar Verzerrungsarme Einbettungen und ihre Anwendungen, Sommersemester 2003
Praktikum Geometrisches Pattern-Matching, Sommersemester 2003
Grundstudiums-Praktikum Generische Programmierung in C++, Wintersemester 2002/2003
Seminar Multimedia-Retrieval, Wintersemester 2002/2003
Seminar Algorithmen zur Suche in geometrischen Daten, Sommersemester 2002
Projektgruppe Such- und Indexierungstechniken für Multimedia-Daten, Wintersemester 2001/2002