parms wc += gu; descr h5 (tag='H1', minlen=5, maxlen=6) ss (tag='S1', minlen=5, maxlen=5, seq="NNNNA") h5 (tag='H2', minlen=4, maxlen=4, seq="GCTC") ss (tag='S2', minlen=1, maxlen=1, seq="A") h5 (tag='H3', minlen=4, maxlen=4, seq="GCGG") ss (minlen=34, maxlen=90) ss (tag='S5', minlen=10, maxlen=10, seq="NGTTCGARAC") h3 (tag='H3') h3 (tag='H2') ss (tag='S7', minlen=5, maxlen=5, seq="NNNNN") h3 (tag='H1')
parms wc += gu; descr h5 (tag='H1', minlen=5, maxlen=6, mispair=1) ss (tag='S1', minlen=5, maxlen=5, seq="NNNNA") h5 (tag='H2', minlen=4, maxlen=4, seq="GCTC") ss (tag='S2', minlen=1, maxlen=1, seq="A") h5 (tag='H3', minlen=4, maxlen=4, seq="GCGG") ss (minlen=24, maxlen=100) ss (tag='S5', minlen=10, maxlen=10, seq="NGTTCGANAC") h3 (tag='H3') h3 (tag='H2') ss (tag='S7', minlen=5, maxlen=5, seq="NNNNN") h3 (tag='H1')
parms wc += gu; descr h5 (tag='H1', minlen=5, maxlen=6, mispair=1) ss (tag='S1', minlen=3, maxlen=7) h5 (tag='H2', minlen=4, maxlen=4, seq="GCTC", mismatch=1) ss (tag='S2', minlen=0, maxlen=2) h5 (tag='H3', minlen=4, maxlen=4, seq="GCGG", mismatch=1) ss (minlen=24, maxlen=100) ss (tag='S5', minlen=10, maxlen=10, seq="NGTTCGANAC", mismatch=2) h3 (tag='H3') h3 (tag='H2') ss (tag='S7', minlen=3, maxlen=7) h3 (tag='H1')
The numbers in the "Rank" columns denote the rank of the hit(s), that match the annotated sequence(s). If the Rank column is empty, none of the annotated sequences was among the hits. The E-values are the range from the highest to the lowest rank.