E2

Sequences

• Seed sequences
• Seed alignment
• Known sequences used for evaluating
• Erpin epn file, Erpin parameters: -03,21 -add 03 07 -pcw 101 -cutoff 26.43 (resp. -cutoff 20.00 or 10.00 [marked with *])

Descriptor 1st iteration

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parms
wc += gu;
descr
ss (tag='S1', minlen=1, maxlen=3)
h5 (tag='H1', minlen=7, maxlen=7, seq="NNNNNNN")
ss (tag='S2', minlen=19, maxlen=19)
h5 (tag='H2', minlen=4, maxlen=4)
ss (tag='S3', minlen=4, maxlen=5)
h3 (tag='H2')
ss (tag='S4', minlen=22, maxlen=22)
h3 (tag='H1')
ss (tag='S5', minlen=9, maxlen=9, seq="ANANNA")
h5 (tag='H3', minlen=5, maxlen=5)
ss (tag='S6', minlen=13, maxlen=14)
h5 (tag='H4', minlen=4, maxlen=4)
ss (tag='S7', minlen=2, maxlen=2)
h5 (tag='H5', minlen=3, maxlen=5)
ss (tag='S8', minlen=3, maxlen=7)
h3 (tag='H5')
ss (tag='S9', minlen=5, maxlen=5, seq="NNNNN")
h3 (tag='H4')
ss (tag='S10', minlen=16, maxlen=16)
h3 (tag='H3')
ss (tag='S11', minlen=3, maxlen=3, seq="ACA")

Descriptor 2nd iteration

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• Diff to desc1
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parms
wc += gu;
descr
ss (tag='S1', minlen=1, maxlen=3)
h5 (tag='H1', minlen=7, maxlen=7, seq="NNNNNNN",mispair=1)
ss (tag='S2', minlen=17, maxlen=21)
h5 (tag='H2', minlen=4, maxlen=4)
ss (tag='S3', minlen=4, maxlen=5)
h3 (tag='H2')
ss (tag='S4', minlen=20, maxlen=24)
h3 (tag='H1')
ss (tag='S5', minlen=9, maxlen=9, seq="ANANNA")
h5 (tag='H3', minlen=5, maxlen=5)
ss (tag='S6', minlen=11, maxlen=16)
h5 (tag='H4', minlen=4, maxlen=4)
ss (tag='S7', minlen=2, maxlen=2)
h5 (tag='H5', minlen=3, maxlen=5)
ss (tag='S8', minlen=3, maxlen=7)
h3 (tag='H5')
ss (tag='S9', minlen=5, maxlen=5, seq="NNNNN")
h3 (tag='H4')
ss (tag='S10', minlen=14, maxlen=18)
h3 (tag='H3')
ss (tag='S11', minlen=3, maxlen=3, seq="ACA")

Descriptor 3rd iteration

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• Diff to desc2
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parms
wc += gu;
descr
ss (tag='S1', minlen=1, maxlen=3)
h5 (tag='H1', minlen=6, maxlen=7, mispair=1)
ss (tag='S2', minlen=17, maxlen=21)
h5 (tag='H2', minlen=4, maxlen=4)
ss (tag='S3', minlen=4, maxlen=5)
h3 (tag='H2')
ss (tag='S4', minlen=20, maxlen=24)
h3 (tag='H1')
ss (tag='S5', minlen=8, maxlen=10, seq="ANANNA")
h5 (tag='H3', minlen=5, maxlen=5)
ss (tag='S6', minlen=11, maxlen=16, seq="UUUCGCUAACA$", mismatch=2)
h5 (tag='H4', minlen=4, maxlen=4)
ss (tag='S7', minlen=0, maxlen=3)
h5 (tag='H5', minlen=3, maxlen=5)
ss (tag='S8', minlen=3, maxlen=8)
h3 (tag='H5')
ss (tag='S9', minlen=5, maxlen=5)
h3 (tag='H4')
ss (tag='S10', minlen=14, maxlen=18)
h3 (tag='H3')
ss (tag='S11', minlen=3, maxlen=3, seq="ACA")

Result table

The numbers in the "Rank" columns denote the rank of the hit(s), that match the annotated sequence(s). If the Rank column is empty, none of the annotated sequences was among the hits. The E-values are the range from the highest to the lowest rank.