SRP

Sequences

• Seed sequences
• Seed alignment
• Known sequences used for evaluating
• Erpin epn file, Erpin parameters: -32,08 -add 32 14 -pcw 101 -cutoff 20.17 ( resp. -cutoff 15.17 [marked with *])

Descriptor 1st iteration

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parms
wc += gu;
descr
h5 (tag='H1', minlen=3, maxlen=3)
h5 (tag='H2', minlen=7, maxlen=7, mispair=2)
ss (tag='S1', minlen=6, maxlen=6)
h3 (tag='H2')
ss (tag='S2', minlen=4, maxlen=4)
h5 (tag='H3', minlen=3, maxlen=4, seq="^UCC")
ss (tag='S3', minlen=8, maxlen=10)
h3 (tag='H3')
h3 (tag='H1')
ss (tag='S3.1', minlen=0, maxlen=1)
h5 (tag='H4', minlen=7, maxlen=11, mispair=2)
ss (tag='S4', minlen=2, maxlen=5)
h5 (tag='H5', minlen=5, maxlen=5, mispair=1)
ss (tag='S5', minlen=3, maxlen=3)
h5 (tag='H6', minlen=7, maxlen=7, mispair=1)
ss (tag='S6', minlen=4, maxlen=4)
h5 (tag='H7', minlen=4, maxlen=5)
ss (tag='S7', minlen=0, maxlen=2)
h5 (tag='H8', minlen=7, maxlen=7, mispair=1)
ss (tag='S8', minlen=1, maxlen=2)
h5 (tag='H9', minlen=4, maxlen=5, mispair=1)
ss (tag='S9', minlen=1, maxlen=1)
h5 (tag='H10', minlen=1, maxlen=1)
ss (tag='S10', minlen=4, maxlen=5)
h5 (tag='H11', minlen=6, maxlen=7)
ss (tag='S11.1', minlen=0, maxlen=1)
h5 (tag='H12', minlen=2, maxlen=2)
ss (tag='S11', minlen=1, maxlen=1)
h5 (tag='H13', minlen=5, maxlen=5, mispair=1)
ss (tag='S12', minlen=1, maxlen=1)
h5 (tag='H14', minlen=1, maxlen=1)
ss (tag='S13', minlen=1, maxlen=1)
h5 (tag='H15', minlen=7, maxlen=7)
ss (tag='S15.1', minlen=0,maxlen=1)
h5 (tag='H16', minlen=3, maxlen=4)
ss (tag='S14', minlen=1, maxlen=1)
h5 (tag='H17', minlen=5, maxlen=5, mispair=1)
ss (tag='S15', minlen=2, maxlen=2)
h5 (tag='H18', minlen=6, maxlen=6, mispair=1)
ss (tag='S16', minlen=4, maxlen=4)
h3 (tag='H18')
ss (tag='S17', minlen=2, maxlen=2)
h3 (tag='H17')
ss (tag='S18', minlen=1, maxlen=1)
h3 (tag='H16')
ss (tag='S16.1', minlen=0, maxlen=2)
h5 (tag='H19', minlen=1, maxlen=2)
ss (tag='S19', minlen=3, maxlen=3)
h3 (tag='H19')
ss (tag='S20', minlen=1, maxlen=2)
h5 (tag='H20', minlen=5, maxlen=5)
ss (tag='S21', minlen=5, maxlen=5)
h5 (tag='H21', minlen=3, maxlen=4)
ss (tag='S22', minlen=4, maxlen=5)
h5 (tag='H22', minlen=1, maxlen=3)
ss (tag='S23', minlen=4, maxlen=8)
h3 (tag='H22')
ss (tag='S24', minlen=4, maxlen=5)
h3 (tag='H21')
ss (tag='S25', minlen=3, maxlen=3)
h3 (tag='H20')
ss (tag='S26', minlen=1, maxlen=1)
h3 (tag='H15')
ss (tag='S27', minlen=1, maxlen=1)
h3 (tag='H14')
ss (tag='S28', minlen=2, maxlen=2)
h3 (tag='H13')
h3 (tag='H12')
ss (tag='S29', minlen=3, maxlen=4)
h3 (tag='H11')
ss (tag='S30', minlen=1, maxlen=2)
h3 (tag='H10')
ss (tag='S31', minlen=1, maxlen=2)
h3 (tag='H9')
ss (tag='S8.1', minlen=0, maxlen=1)
h3 (tag='H8')
ss (tag='S32', minlen=1, maxlen=2)
h3 (tag='H7')
h3 (tag='H6')
ss (tag='S33', minlen=5, maxlen=5)
h3 (tag='H5')
ss (tag='S34', minlen=1, maxlen=4)
h3 (tag='H4')

Descriptor 2nd iteration

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• Diff to desc1
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parms
wc += gu;
descr
h5 (tag='H1', minlen=3, maxlen=3)
h5 (tag='H2', minlen=7, maxlen=7, mispair=3) 
ss (tag='S1', minlen=4, maxlen=8) 
h3 (tag='H2', seq="U$")
ss (tag='S2', minlen=4, maxlen=4, seq="^GU")
h5 (tag='H3', minlen=3, maxlen=4, seq="^UCC")
ss (tag='S3', minlen=6, maxlen=12) 
h3 (tag='H3')
h3 (tag='H1')
ss (tag='S3.1', minlen=0, maxlen=1)
h5 (tag='H4', minlen=7, maxlen=11, mispair=3) 
ss (tag='S4', minlen=2, maxlen=5) 
h5 (tag='H5', minlen=5, maxlen=5, mispair=2) 
ss (tag='S5', minlen=3, maxlen=3) 
h5 (tag='H6', minlen=7, maxlen=7, mispair=2) 
ss (tag='S6', minlen=4, maxlen=4) 
h5 (tag='H7', minlen=4, maxlen=5, mispair=1) 
ss (tag='S7', minlen=0, maxlen=2) 
h5 (tag='H8', minlen=7, maxlen=7, mispair=2) 
ss (tag='S8', minlen=1, maxlen=2) 
h5 (tag='H9', minlen=4, maxlen=5, mispair=2)
ss (tag='S9', minlen=1, maxlen=1) 
h5 (tag='H10', minlen=1, maxlen=1) 
ss (tag='S10', minlen=4, maxlen=5) 
h5 (tag='H11', minlen=6, maxlen=7, mispair=1) 
ss (tag='S11.1', minlen=0, maxlen=1) 
h5 (tag='H12', minlen=2, maxlen=2) 
ss (tag='S11', minlen=1, maxlen=1) 
h5 (tag='H13', minlen=5, maxlen=5, mispair=2)
ss (tag='S12', minlen=1, maxlen=1) 
h5 (tag='H14', minlen=1, maxlen=1) 
ss (tag='S13', minlen=1, maxlen=1) 
h5 (tag='H15', minlen=7, maxlen=7, mispair=1) 
ss (tag='S15.1', minlen=0,maxlen=1) 
h5 (tag='H16', minlen=3, maxlen=4) 
ss (tag='S14', minlen=1, maxlen=1) 
h5 (tag='H17', minlen=5, maxlen=5, mispair=2)
ss (tag='S15', minlen=2, maxlen=2)
h5 (tag='H18', minlen=6, maxlen=6, mispair=2)
ss (tag='S16', minlen=3, maxlen=6) 
h3 (tag='H18')
ss (tag='S17', minlen=2, maxlen=2) 
h3 (tag='H17')
ss (tag='S18', minlen=1, maxlen=1) 
h3 (tag='H16')
ss (tag='S16.1', minlen=0, maxlen=2) 
h5 (tag='H19', minlen=1, maxlen=2) 
ss (tag='S19', minlen=3, maxlen=5) 
h3 (tag='H19')
ss (tag='S20', minlen=1, maxlen=2) 
h5 (tag='H20', minlen=5, maxlen=5, mispair=1) 
ss (tag='S21', minlen=5, maxlen=5) 
h5 (tag='H21', minlen=3, maxlen=4) 
ss (tag='S22', minlen=4, maxlen=5) 
h5 (tag='H22', minlen=1, maxlen=3) 
ss (tag='S23', minlen=3, maxlen=10) 
h3 (tag='H22')
ss (tag='S24', minlen=4, maxlen=5) 
h3 (tag='H21')
ss (tag='S25', minlen=3, maxlen=3) 
h3 (tag='H20')
ss (tag='S26', minlen=1, maxlen=1) 
h3 (tag='H15')
ss (tag='S27', minlen=1, maxlen=1) 
h3 (tag='H14')
ss (tag='S28', minlen=2, maxlen=2) 
h3 (tag='H13')
h3 (tag='H12')
ss (tag='S29', minlen=3, maxlen=4) 
h3 (tag='H11')
ss (tag='S30', minlen=1, maxlen=2) 
h3 (tag='H10')
ss (tag='S31', minlen=1, maxlen=2) 
h3 (tag='H9')
ss (tag='S8.1', minlen=0, maxlen=1) 
h3 (tag='H8')
ss (tag='S32', minlen=1, maxlen=2) 
h3 (tag='H7')
h3 (tag='H6')
ss (tag='S33', minlen=5, maxlen=5) 
h3 (tag='H5')
ss (tag='S34', minlen=1, maxlen=4) 
h3 (tag='H4')

Descriptor 3nd iteration

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• Diff to desc2
• Toggle view here

parms
wc += gu;
descr
h5 (tag='H1', minlen=3, maxlen=3, seq="GCC")
h5 (tag='H2', minlen=7, maxlen=7, mispair=3, ends='mm') 
ss (tag='S1', minlen=4, maxlen=8) 
h3 (tag='H2', seq="U$")
ss (tag='S2', minlen=4, maxlen=4, seq="^GU")
h5 (tag='H3', minlen=3, maxlen=4, seq="^UCC")
ss (tag='S3', minlen=6, maxlen=12) 
h3 (tag='H3')
h3 (tag='H1')
ss (tag='S3.1', minlen=0, maxlen=1)
h5 (tag='H4', minlen=7, maxlen=11, mispair=3, ends='mm') 
ss (tag='S4', minlen=2, maxlen=5) 
h5 (tag='H5', minlen=5, maxlen=5, mispair=2, ends='mm') 
ss (tag='S5', minlen=3, maxlen=3) 
h5 (tag='H6', minlen=7, maxlen=7, mispair=2, ends='mm') 
ss (tag='S6', minlen=4, maxlen=4) 
h5 (tag='H7', minlen=4, maxlen=5, mispair=1, ends='mm') 
ss (tag='S7', minlen=0, maxlen=2) 
h5 (tag='H8', minlen=7, maxlen=7, mispair=2, ends='mm') 
ss (tag='S8', minlen=1, maxlen=2) 
h5 (tag='H9', minlen=4, maxlen=5, mispair=2, ends='mm')
ss (tag='S9', minlen=1, maxlen=1) 
h5 (tag='H10', minlen=1, maxlen=1) 
ss (tag='S10', minlen=4, maxlen=5) 
h5 (tag='H11', minlen=6, maxlen=7, mispair=1, ends='mm') 
ss (tag='S11.1', minlen=0, maxlen=1) 
h5 (tag='H12', minlen=2, maxlen=2) 
ss (tag='S11', minlen=1, maxlen=1) 
h5 (tag='H13', minlen=5, maxlen=5, mispair=2, ends='mm')
ss (tag='S12', minlen=1, maxlen=1) 
h5 (tag='H14', minlen=1, maxlen=1) 
ss (tag='S13', minlen=1, maxlen=1) 
h5 (tag='H15', minlen=7, maxlen=7, mispair=2, ends='mm') 
ss (tag='S15.1', minlen=0,maxlen=1) 
h5 (tag='H16', minlen=3, maxlen=4) 
ss (tag='S14', minlen=1, maxlen=1) 
h5 (tag='H17', minlen=5, maxlen=5, mispair=2, ends='mm')
ss (tag='S15', minlen=2, maxlen=2)
h5 (tag='H18', minlen=6, maxlen=6, mispair=2, ends='mm')
ss (tag='S16', minlen=3, maxlen=6) 
h3 (tag='H18')
ss (tag='S17', minlen=2, maxlen=2) 
h3 (tag='H17')
ss (tag='S18', minlen=1, maxlen=1) 
h3 (tag='H16')
ss (tag='S16.1', minlen=0, maxlen=2) 
h5 (tag='H19', minlen=1, maxlen=2) 
ss (tag='S19', minlen=3, maxlen=5) 
h3 (tag='H19')
ss (tag='S20', minlen=1, maxlen=2) 
h5 (tag='H20', minlen=5, maxlen=5, mispair=2, ends='mm') 
ss (tag='S21', minlen=5, maxlen=5) 
h5 (tag='H21', minlen=3, maxlen=4) 
ss (tag='S22', minlen=4, maxlen=5) 
h5 (tag='H22', minlen=1, maxlen=3) 
ss (tag='S23', minlen=3, maxlen=10) 
h3 (tag='H22')
ss (tag='S24', minlen=4, maxlen=5) 
h3 (tag='H21')
ss (tag='S25', minlen=3, maxlen=3) 
h3 (tag='H20')
ss (tag='S26', minlen=1, maxlen=1) 
h3 (tag='H15')
ss (tag='S27', minlen=1, maxlen=1) 
h3 (tag='H14')
ss (tag='S28', minlen=2, maxlen=2) 
h3 (tag='H13')
h3 (tag='H12')
ss (tag='S29', minlen=3, maxlen=4) 
h3 (tag='H11')
ss (tag='S30', minlen=1, maxlen=2) 
h3 (tag='H10')
ss (tag='S31', minlen=1, maxlen=2) 
h3 (tag='H9')
ss (tag='S8.1', minlen=0, maxlen=1) 
h3 (tag='H8')
ss (tag='S32', minlen=1, maxlen=2) 
h3 (tag='H7')
h3 (tag='H6')
ss (tag='S33', minlen=5, maxlen=5) 
h3 (tag='H5')
ss (tag='S34', minlen=1, maxlen=4) 
h3 (tag='H4')

Result table

The numbers in the "Rank" columns denote the rank of the hit(s), that match the annotated sequence(s). If the Rank column is empty, none of the annotated sequences was among the hits. The E-values are the range from the highest to the lowest rank.