U5
Sequences
Descriptor 1st iteration
parms
wc += gu;
descr
h5 (tag='H1', minlen=3, maxlen=4)
ss (tag='S1', minlen=2, maxlen=2)
h5 (tag='H2', minlen=11, maxlen=11)
ss (tag='S2', minlen=8, maxlen=8)
h5 (tag='H3', minlen=8, maxlen=8, seq="AAAUCUUU")
ss (tag='S3', minlen=11, maxlen=11)
h3 (tag='H3')
ss (tag='S4', minlen=3, maxlen=3)
h3 (tag='H2')
ss (tag='S5', minlen=6, maxlen=6)
h3 (tag='H1')
ss (tag='S6', minlen=17, maxlen=20)
h5 (tag='H5', minlen=7, maxlen=7)
ss (tag='S8', minlen=6, maxlen=10)
h3 (tag='H5')
Descriptor 2nd iteration
parms
wc += gu;
descr
h5 (tag='H1', minlen=3, maxlen=4)
ss (tag='S1', minlen=2, maxlen=2)
h5 (tag='H2', minlen=10, maxlen=11, mispair=1)
ss (tag='S2', minlen=7, maxlen=9)
h5 (tag='H3', minlen=8, maxlen=8, seq="AAAUCUUU", mispair=1, mismatch=1)
ss (tag='S3', minlen=10, maxlen=12)
h3 (tag='H3')
ss (tag='S4', minlen=3, maxlen=3)
h3 (tag='H2')
ss (tag='S5', minlen=5, maxlen=7)
h3 (tag='H1')
ss (tag='S6', minlen=16, maxlen=21)
h5 (tag='H5', minlen=6, maxlen=7, mispair=1)
ss (tag='S8', minlen=5, maxlen=11)
h3 (tag='H5')
Descriptor 3rd iteration
parms
wc += gu;
descr
h5 (tag='H1', minlen=3, maxlen=4)
ss (tag='S1', minlen=0, maxlen=2)
h5 (tag='H2', minlen=10, maxlen=11, mispair=2)
ss (tag='S2', minlen=6, maxlen=10)
h5 (tag='H3', minlen=6, maxlen=10, seq="AAUCUU", mispair=1, mismatch=1)
ss (tag='S3', minlen=8, maxlen=14)
h3 (tag='H3')
ss (tag='S4', minlen=0, maxlen=5)
h3 (tag='H2', seq="GGAGAGGAAC", mismatch=3)
ss (tag='S5', minlen=5, maxlen=7)
h3 (tag='H1')
ss (tag='rest', len=45)
Result table
| Species | RNAMotif 1 | RNAMotif 2 | RNAMotif 3 | BLAST | Blast Rank | Blast E-Values | ERPIN | ERPIN Rank |
|---|
| homo sapiens (6) | 5 hits | 64 hits | 6237 hits | 115 hits | top hits | (1, 2, 3, 5, 6) | 2e-33 - 1e-24 | 66 hits | (6, 7, 8, 10, 23) |
|---|
| pan troglodytes (7) | 5 hits | 68 hits | 6060 hits | 109 hits | top hits | (1, 2, 3, 4, 5, 8, 9) | 2e-30 - 6e-22 | 70 hits | (7, 8, 9, 10, 11, 15, 19) |
|---|
| macaca mulatta (15) | 1 hits | 53 hits | 5565 hits | 99 hits | top hits | (1, 6, 7, 8, 9, 13, 18) | 3e-30 - 5e-18 | 66 hits | (2, 3, 4, 6, 7, 9, 10, 11, 21, 22) |
|---|
| rattus norvegicus (4) | 8 hits | 57 hits | 3270 hits | 63 hits | top hits | (1, 2, 4, 5) | 6e-33 - 5e-29 | 33 hits | (2, 3, 6, 7) |
|---|
| mus musculus (6) | 7 hits | 54 hits | 3548 hits | 77 hits | top hits | (1, 2, 3, 6, 8) | 6e-33 - 4e-25 | 33 hits | (1, 2, 4, 5, 7, 8) |
|---|
| bos taurus (5) | 7 hits | 66 hits | 3607 hits | 95 hits | top hits | (2, 3, 6, 7, 10) | 9e-30 - 8e-21 | 36 hits | (1, 2, 6, 7, 9) |
|---|
| canis familiaris (4) | 5 hits | 72 hits | 4009 hits | 136 hits | top hits | (1, 3, 4, 7) | 5e-32 - 2e-24 | 50 hits | (6, 7, 9, 11) |
|---|
| monodelphis domestica (5) | 7 hits | 99 hits | 5930 hits | 48 hits | top hits | (1, 2, 4, 5, 7) | 5e-26 - 8e-23 | 39 hits | (1, 2, 3, 4, 7) |
|---|
| ornithorhynchus anatinus (4) | 7 hits | 34 hits | 2476 hits | 34 hits | top hits | (1, 3, 7, 8) | 6e-25 - 9e-17 | 40 hits | (2, 5, 6, 7) |
|---|
| gallus gallus (2) | 6 hits | 26 hits | 1782 hits | 55 hits | top hits | (1) | 2e-20 | 18 hits | (1) |
|---|
| anolis carolinensis (6) | 3 hits | 23 hits | 5097 hits | 31 hits | top hits | (1, 2, 3) | 5e-23 - 1e-21 | 60 hits | (2, 4, 5) |
|---|
| xenopus tropicalis (2) | 47 hits | 120 hits | 1572 hits | 75 hits | top hits | (4) | 6e-21 | 73 hits | (1) |
|---|
| danio rerio (7) | | 180 hits | 1957 hits | 169 hits | top hits | (1, 2, 4, 5, 6, 7,10) | 8e-15 - 2e-14 | 11 hits | (1, 2, 3, 4, 7, 8) |
|---|
| takifugu rubripes (6) | | 18 hits | 390 hits | 22 hits | top hits | (1, 3, 6, 7, 11, 16) | 2e-20 - 9e-17 | 23 hits | (1, 2, 6, 9) |
|---|
| branchiostoma floridae (9) | | 12 hits | 909 hits | 26 hits | top hits | (3, 4, 5, 7, 8, 14, 20, 22, 23) | 2e-16 - 5e-10 | 199 hits | (1, 2) |
|---|
| ciona intestinalis (5) | | 3 hits | 148 hits | 93 hits | top hits | (7, 30, 53, 49) | 7e-15 - 2e-13 | 69 hits | (1, 2, 3, 4, 5) |
|---|
| strongylocentrotus purpuratus (8) | | 19 hits | 1250 hits | 63 hits | top hits | (1, 2, 3, 4, 5, 6, 7, 8) | 1e-14 - 3e-13 | 16 hits | (6, 8, 9, 10, 11, 12,13) |
|---|
| drosophila melanogaster (7) | | 1 hits | 111 hits | 18 hits | top hits | (1, 2, 3, 4, 5, 6) | 1e-17 - 1e-13 | 16 hits | |
|---|
| apis mellifera (3) | | 18 hits | 637 hits | 44 hits | top hits | (1, 2, 3) | 1e-17 - 4e-16 | 236 hits | |
|---|
| caenorhabditis elegans (9) | | 17 hits | 226 hits | 28 hits | top hits | (2, 3, 6, 7, 9, 10, 11) | 8e-14 - 2e-12 | 51 hits | |
|---|
| trichinella spiralis (3) | | 6 hits | 118 hits | 5 hits | top hits | (1, 2) | 2e-14 - 5e-13 | 2 hits | (1) |
|---|
| schmidtea mediterannea (2) | | 140 hits | 1408 hits | 45 hits | top hits | (1, 2) | 3e-09 - 8e-09 | 62 hits | |
|---|
| capitella capitata (4) | | 1 hits | 324 hits | 22 hits | top hits | (1, 2, 14) | 8e-15 - 6e-13 | 96 hits | |
|---|
| hydra magnipapillata (7) | | 869 hits | 13540 hits | 1278 hits | top hits | (3, 15, 16, 35, 48, 83, 121) | 4e-13 - 2e-10 | 172 hits | |
|---|
| nematostella vectensis (7) | | 11 hits | 516 hits | 228 hits | top hits | (3, 10, 102, 107) | 2e-16 - 8e-14 | 248 hits | (1) |
|---|
| trichoplax adhaerens (1) | | 4 hits | 104 hits | 7 hits | top hits | (1) | 5e-16 | 3 hits | (1) |
|---|
| monosiga brevicollis | | | 11 hits | | | | 3 hits | |
|---|
The numbers in the "Rank" columns denote the rank of the hit(s), that match the annotated sequence(s). If the Rank column is empty, none of the annotated sequences was among the hits. The E-values are the range from the highest to the lowest rank.