vault RNA
Sequences
Descriptor 1st iteration
parms
wc += gu;
descr
h5 (tag='H1', minlen=5, maxlen=6)
ss (tag='S1', minlen=5, maxlen=5, seq="NNNNA")
h5 (tag='H2', minlen=4, maxlen=4, seq="GCTC")
ss (tag='S2', minlen=1, maxlen=1, seq="A")
h5 (tag='H3', minlen=4, maxlen=4, seq="GCGG")
ss (minlen=34, maxlen=90)
ss (tag='S5', minlen=10, maxlen=10, seq="NGTTCGARAC")
h3 (tag='H3')
h3 (tag='H2')
ss (tag='S7', minlen=5, maxlen=5, seq="NNNNN")
h3 (tag='H1')
Descriptor 2nd iteration
parms
wc += gu;
descr
h5 (tag='H1', minlen=5, maxlen=6, mispair=1)
ss (tag='S1', minlen=5, maxlen=5, seq="NNNNA")
h5 (tag='H2', minlen=4, maxlen=4, seq="GCTC")
ss (tag='S2', minlen=1, maxlen=1, seq="A")
h5 (tag='H3', minlen=4, maxlen=4, seq="GCGG")
ss (minlen=24, maxlen=100)
ss (tag='S5', minlen=10, maxlen=10, seq="NGTTCGANAC")
h3 (tag='H3')
h3 (tag='H2')
ss (tag='S7', minlen=5, maxlen=5, seq="NNNNN")
h3 (tag='H1')
Descriptor 3rd iteration
parms
wc += gu;
descr
h5 (tag='H1', minlen=5, maxlen=6, mispair=1)
ss (tag='S1', minlen=3, maxlen=7)
h5 (tag='H2', minlen=4, maxlen=4, seq="GCTC", mismatch=1)
ss (tag='S2', minlen=0, maxlen=2)
h5 (tag='H3', minlen=4, maxlen=4, seq="GCGG", mismatch=1)
ss (minlen=24, maxlen=100)
ss (tag='S5', minlen=10, maxlen=10, seq="NGTTCGANAC", mismatch=2)
h3 (tag='H3')
h3 (tag='H2')
ss (tag='S7', minlen=3, maxlen=7)
h3 (tag='H1')
Result table
Species | RNAMotif 1 | RNAMotif 2 | RNAMotif 3 | BLAST | Blast Rank | Blast E-Values | ERPIN | ERPIN Rank | RaveNnA | RaveNnA Rank |
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homo sapiens (3) | 3 hits | 3 hits | 917 hits | 31 hits | top hits | (1,2,3) | 4e-27 - 1e-23 | 473 hits | (1,2,3) | | |
---|
pan troglodytes | 3 hits | 4 hits | 813 hits | 43 hits | top hits | (1,2,3) new candidates (aln with hom.sap.) | 2e-26 - 5e-21 | 338 hits | (1, 2, 10) cand. | | |
---|
macaca mulatta (3) | 2 hits | 2 hits | 791 hits | 32 hits | top hits | (1,2,5) | 9e-20 - 0.001 | 281 hits | (1,2,3) | | |
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rattus norvegicus (1) | 1 hits | 1 hits | 1040 hits | 61 hits | top hits | (1) | 6e-43 | 104 hits | (1) | | |
---|
mus musculus (1) | 1 hits | 1 hits | 857 hits | 44 hits | top hits | (1) | 1e-42 | 177 hits | (1) | | |
---|
bos taurus (1) | 1 hits | 1 hits | 856 hits | 59 hits | top hits | (1) | 9e-12 | 294 hits | (1) | | |
---|
canis familiaris (1) | | | 867 hits | 43 hits | top hits | (1) | 2e-07 | 883 hits | (1) | | |
---|
monodelphis domestica (1) | | | 936 hits | 18 hits | top hits | (1) | 0.057 | 202 hits | | | |
---|
ornithorhynchus anatinus (2) | | | 912 hits | 159 hits | top hits | (1, 3) | 2e-06 - 0.007 | 74 hits | (1, 3) | | |
---|
gallus gallus (1) | | | 370 hits | 55 hits | top hits | (1) | 0.001 | 335 hits | | | |
---|
anolis carolinensis | | | 1438 hits | 1 hits | top hits | (1) new candidate (aln with xen.tro.) | 0.084 | 55 hits | | 960 hits | |
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xenopus tropicalis (5) | | | 423 hits | 10 hits | top hits | (1, 2, 3, 4, 6) | 7e-08 - 0.009 | 17 hits | (9) | 38 hits | |
---|
danio rerio (4) | | | 282 hits | 47 hits | top hits | | | 111 hits | | 828 hits | (1,2,3,8) |
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takifugu rubripes (5) | | | 273 hits | 12 hits | top hits | (6) | (2.5) | 8 hits | | 318 hits | (1,2,3,5) |
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branchiostoma floridae (6) | | | 430 hits | 1 hits | top hits | | | 5 hits | | 319 hits | (2,20,52,72,76,81) |
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ciona intestinalis (2) | | | 66 hits | 20 hits | top hits | | | 2 hits | | 58 hits | (48) |
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strongylocentrotus purpuratus (3) | | | 277 hits | 3 hits | top hits | | | 87 hits | | 318 hits | (65) |
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drosophila melanogaster | | | 110 hits | 9 hits | top hits | | | 4 hits | | 57 hits | |
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apis mellifera | | | 182 hits | 20 hits | top hits | | | 96 hits | | 131 hits | |
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caenorhabditis elegans | | | 44 hits | 7 hits | top hits | | | 2 hits | | 84 hits | |
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trichinella spiralis | | | 19 hits | 2 hits | top hits | | | 15 hits | | 131 hits | |
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schmidtea mediterannea | | | 153 hits | 3 hits | top hits | | | 187 hits | | 385 hits | |
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capitella capitata | | | 201 hits | 6 hits | top hits | | | 1 hits | | 63 hits | |
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hydra magnipapillata | | | 1210 hits | 108 hits | top hits | | | 15558 hits | | | |
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nematostella vectensis | | | 276 hits | 2 hits | top hits | | | 5 hits | | 128 hits | |
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trichoplax adhaerens | | | 15 hits | top hits | | | | | 23 hits | |
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monosiga brevicollis | | | 96 hits | 5 hits | top hits | | | | | 6 hits | |
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The numbers in the "Rank" columns denote the rank of the hit(s), that match the annotated sequence(s). If the Rank column is empty, none of the annotated sequences was among the hits. The E-values are the range from the highest to the lowest rank.