E2

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Descriptor 1
Descriptor 2
Descriptor 3
Result table

Sequences

Seed sequences
Seed alignment
Known sequences used for evaluating
Erpin epn file, Erpin parameters: -03,21 -add 03 07 -pcw 101 -cutoff 26.43 (resp. -cutoff 20.00 or 10.00 [marked with *])

Descriptor 1st iteration

parms
wc += gu;
descr
ss (tag='S1', minlen=1, maxlen=3)
h5 (tag='H1', minlen=7, maxlen=7, seq="NNNNNNN")
ss (tag='S2', minlen=19, maxlen=19)
h5 (tag='H2', minlen=4, maxlen=4)
ss (tag='S3', minlen=4, maxlen=5)
h3 (tag='H2')
ss (tag='S4', minlen=22, maxlen=22)
h3 (tag='H1')
ss (tag='S5', minlen=9, maxlen=9, seq="ANANNA")
h5 (tag='H3', minlen=5, maxlen=5)
ss (tag='S6', minlen=13, maxlen=14)
h5 (tag='H4', minlen=4, maxlen=4)
ss (tag='S7', minlen=2, maxlen=2)
h5 (tag='H5', minlen=3, maxlen=5)
ss (tag='S8', minlen=3, maxlen=7)
h3 (tag='H5')
ss (tag='S9', minlen=5, maxlen=5, seq="NNNNN")
h3 (tag='H4')
ss (tag='S10', minlen=16, maxlen=16)
h3 (tag='H3')
ss (tag='S11', minlen=3, maxlen=3, seq="ACA")

Descriptor 2nd iteration

parms
wc += gu;
descr
ss (tag='S1', minlen=1, maxlen=3)
h5 (tag='H1', minlen=7, maxlen=7, seq="NNNNNNN",mispair=1)
ss (tag='S2', minlen=17, maxlen=21)
h5 (tag='H2', minlen=4, maxlen=4)
ss (tag='S3', minlen=4, maxlen=5)
h3 (tag='H2')
ss (tag='S4', minlen=20, maxlen=24)
h3 (tag='H1')
ss (tag='S5', minlen=9, maxlen=9, seq="ANANNA")
h5 (tag='H3', minlen=5, maxlen=5)
ss (tag='S6', minlen=11, maxlen=16)
h5 (tag='H4', minlen=4, maxlen=4)
ss (tag='S7', minlen=2, maxlen=2)
h5 (tag='H5', minlen=3, maxlen=5)
ss (tag='S8', minlen=3, maxlen=7)
h3 (tag='H5')
ss (tag='S9', minlen=5, maxlen=5, seq="NNNNN")
h3 (tag='H4')
ss (tag='S10', minlen=14, maxlen=18)
h3 (tag='H3')
ss (tag='S11', minlen=3, maxlen=3, seq="ACA")

Descriptor 3rd iteration

parms
wc += gu;
descr
ss (tag='S1', minlen=1, maxlen=3)
h5 (tag='H1', minlen=6, maxlen=7, mispair=1)
ss (tag='S2', minlen=17, maxlen=21)
h5 (tag='H2', minlen=4, maxlen=4)
ss (tag='S3', minlen=4, maxlen=5)
h3 (tag='H2')
ss (tag='S4', minlen=20, maxlen=24)
h3 (tag='H1')
ss (tag='S5', minlen=8, maxlen=10, seq="ANANNA")
h5 (tag='H3', minlen=5, maxlen=5)
ss (tag='S6', minlen=11, maxlen=16, seq="UUUCGCUAACA$", mismatch=2)
h5 (tag='H4', minlen=4, maxlen=4)
ss (tag='S7', minlen=0, maxlen=3)
h5 (tag='H5', minlen=3, maxlen=5)
ss (tag='S8', minlen=3, maxlen=8)
h3 (tag='H5')
ss (tag='S9', minlen=5, maxlen=5)
h3 (tag='H4')
ss (tag='S10', minlen=14, maxlen=18)
h3 (tag='H3')
ss (tag='S11', minlen=3, maxlen=3, seq="ACA")

Result table

Species	RNAMotif 1	RNAMotif 2	RNAMotif 3	BLAST	Blast Rank	Blast E-Values	ERPIN	ERPIN Rank
homo sapiens (2)	2 hits	342 hits	2 hits	6 hits \| top hits	(1,2)	5e-46 - 1e-44	4 hits	(1,2)
pan troglodytes (2)	2 hits	340 hits	2 hits	6 hits \| top hits	(1,2)	3e-44 - 5e-44	4 hits	(1,3)
macaca mulatta (2)	2 hits	273 hits	2 hits	6 hits \| top hits	(1,2)	1e-43 - 5e-43	4 hits	(1,2)
rattus norvegicus (2)		194 hits	2 hits	8 hits \| top hits	(1,4)	1e-34 - 1e-27	2 hits	(1,2)
mus musculus (2)		181 hits	2 hits	4 hits \| top hits	(1,2)	6e-35 - 3e-28	2 hits	(1,2)
bos taurus (2)	1 hits	239 hits	1 hits	10 hits \| top hits	(1,2)	6e-40 - 2e-34	2 hits	(1)
canis familiaris (2)		242 hits	4 hits	29 hits \| top hits	(1,4)	2e-42 - 4e-34	8 hits	(1)
monodelphis domestica (2)		222 hits		2 hits \| top hits	(1,2)	3e-29 - 3e-29	2 hits	(1,2)*
ornithorhynchus anatinus		117 hits		10 hits \| top hits	(1, 2, 3) new candidates (aln with hom.sap.)	1e-26 - 3e-16	3 hits	(1, 2, 3) new cand
gallus gallus (2)		107 hits		2 hits \| top hits	(1,2)	1e-15 - 1e-15	2 hits	(1,2)*
anolis carolinensis		176 hits		2 hits \| top hits	(1,2) new candidates (aln with xen.tro.)	7e-27 - 3e-19	1 hits	(1) new cand
xenopus tropicalis (2)		291 hits	1 hits	1 hits \| top hits	(1)	4e-18	1 hits
danio rerio (1)		165 hits	1 hits	5 hits \| top hits	(1)	7e-13	3 hits
takifugu rubripes (1)		24 hits			(1)	9e-06
branchiostoma floridae		101 hits
ciona intestinalis		20 hits
strongylocentrotus purpuratus		95 hits		1 hits \| top hits			1 hits
drosophila melanogaster		10 hits		1 hits \| top hits
apis mellifera		24 hits		1 hits \| top hits			1 hits
caenorhabditis elegans		36 hits					1 hits
trichinella spiralis		14 hits
schmidtea mediterannea		283 hits	11 hits
capitella capitata		30 hits
hydra magnipapillata	1 hits	2074 hits	10 hits	2 hits \| top hits			15 hits
nematostella vectensis		32 hits	2 hits
trichoplax adhaerens		16 hits
monosiga brevicollis		2 hits

The numbers in the "Rank" columns denote the rank of the hit(s), that match the annotated sequence(s). If the Rank column is empty, none of the annotated sequences was among the hits. The E-values are the range from the highest to the lowest rank.