ADPfusionSet: Efficient Dynamic Programming in Haskell

The development of ADPfusionSet continues within the Generalized ADP framework.

README

(included from project) Christian Höner zu Siederdissen - ADPfusionSet

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ADPfusionSet

generalized Algebraic Dynamic Programming Homepage

Ideas implemented here are described in a couple of papers:

  1. Christian Hoener zu Siederdissen
    Sneaking Around ConcatMap: Efficient Combinators for Dynamic Programming
    2012, Proceedings of the 17th ACM SIGPLAN international conference on Functional programming
    paper preprint
  2. Andrew Farmer, Christian Höner zu Siederdissen, and Andy Gill.
    The HERMIT in the stream: fusing stream fusion’s concatMap
    2014, Proceedings of the ACM SIGPLAN 2014 workshop on Partial evaluation and program manipulation.
    paper
  3. Christian Höner zu Siederdissen, Ivo L. Hofacker, and Peter F. Stadler.
    Product Grammars for Alignment and Folding
    2014, IEEE/ACM Transactions on Computational Biology and Bioinformatics. 99
    paper
  4. Christian Höner zu Siederdissen, Sonja J. Prohaska, and Peter F. Stadler
    Algebraic Dynamic Programming over General Data Structures
    2015, BMC Bioinformatics
    preprint
  5. Maik Riechert, Christian Höner zu Siederdissen, and Peter F. Stadler
    Algebraic dynamic programming for multiple context-free languages
    2015, submitted
    preprint

Introduction

ADPfusionSet extends ADPfusion with index structures suitable for sets. Included are sets, and sets with one and two boundaries. The classical example for DP on sets with a single boundary is the travelling salesman problem. Here, the set denotes the set of cities already visited, while the boundary is the last city that was visited.

Installation

Follow the gADP examples.

Contact

Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/

hackage
 sources
 bugtracker
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Stable Sources git Bugtracker Build Status

Usage of this library in a Haskell project:

This package provides no "main" executable, but rather only library functionality. (Though sometimes tools, or example programs are provided). Usage requires some knowledge of Haskell.
  1. Include the library in your cabal file.
  2. Use stack to simplify development. This will require adding the library with an exact version to the stack.yaml file. This includes the option to include this library directly from its github repository.