TEACHING
Bachelor and Master Thesis
If you are interested in working with a group of highly
motivated, and friendly people, don't hesitate to contact
me.
Interesting research questions are:
Automatic transcription start site annotation:
In
recent years high-throughput sequencing methods have been
developed and are suitable to detect transcripts of a
cell. One already successfully applied experimental approach
(see for instance our publications Schmidtke et al. 2011 and
Sharma et al. 2010 below) is differential RNA sequencing
(dRNAseq). This approach has been developed to identify
transcription start sites (TSS) of genes and operons. Given
a dRNAseq data set we developed a computational method to
automatically detect statistically significant TSS along the
genome (for details see Schmidtke et al. 2011).
A prototype has been implemented in Perl and was applied to
one data set. To be applicable for large-scale analysis it
needs to be ported to C, C++ or an equivalent programming
language. When ported, the approach has to be evaluated and
compared with other methods. Hence the student has to
re-implement the algorithm and subsequently deal with real
world data sets.
Current Classes
WS 2015/2016
Allgemeine Information
Beide Veranstaltungen
(sowohl VO als auch UE) sind
im II. Masterstudium
Biologische Chemie angesiedelt und gehoeren laut
Vorlesungsverzeichnis zu:
"2. Wahlmodule"
"2.1. Fachvertiefung Chemische Biologie"
"2.1.1. Wahlmodulgruppe Chemie"
Im "Curriculum
für das Masterstudium Chemie" (Stand August 2011) sind
die angebotenen Veranstaltungen unter "TC-1" zu finden.
Angebotene Veranstaltungen
270087 Vorlesung zu Struktur und Dynamik von Biopolymeren
Please check Moodle for further information and material.
Please register for the course on U:SPACE!
First course 06.10.2015, 13:00-14:30 Uhr, Instituts für Theoretische Chemie, Währingerstr. 17, Erdgeschoss, 1090 Wien
270038 Übungen zu Struktur und Dynamik von Biopolymeren
Please check Moodle for further information and material.
Please register for the course on U:SPACE!
First course 06.10.2015, 14:30-16:00 Uhr, Instituts für Theoretische Chemie, Währingerstr. 17, Erdgeschoss, 1090 Wien
Past Classes
SS 2015
Angebotene Veranstaltungen
270056 Übung zu Algorithmen und Programmentwicklung für die Biologische Chemie
Please check Moodle for further information and material.
WS 2013/2014
Angebotene Veranstaltungen
270087 Vorlesung zu Struktur und Dynamik von Biopolymeren
Please check Moodle for further information and material.
270038 Übung zu Struktur und Dynamik von Biopolymeren
Please check Moodle for further information and material.
SS 2013
Angebotene Veranstaltungen
270054 Übung zu Algorithmen und Programmentwicklung für die Biologische Chemie
Please check Moodle for further information and material.
WS 2012/2013
Angebotene Veranstaltungen
270087 Vorlesung zu Struktur und Dynamik von Biopolymeren
Please check Moodle for further information and material.
270038 Übungen zu Struktur und Dynamik von Biopolymeren
Please check Moodle for further information and material.
SS 2011
Angebotene Veranstaltungen
270034 Übungen zu Algorithmen und Programmentwicklung für die Biologische Chemie
Further Information
270049 Praktikum zur Bioinformatik der Nukleinsäuren
Further Information
WS 2011/2012
Angebotene Veranstaltungen
270087 Vorlesung zu Struktur und Dynamik von Biopolymeren
Further Information
270038 Übungen zu Struktur und Dynamik von Biopolymeren
Further Information