| arrangement typedef | bbq::weighted_footprint_detector< w_bit_set > | |
| arrangement_range typedef | bbq::weighted_footprint_detector< w_bit_set > | |
| bound(const w_bit_set &M, const unsigned int &j) | bbq::weighted_footprint_detector< w_bit_set > | |
| cell_set typedef | bbq::weighted_footprint_detector< w_bit_set > | |
| clear() | bbq::weighted_footprint_detector< w_bit_set > | |
| compute_h_best_intersections() | bbq::weighted_footprint_detector< w_bit_set > | |
| compute_index_table() | bbq::weighted_footprint_detector< w_bit_set > | |
| compute_intersections() | bbq::weighted_footprint_detector< w_bit_set > | |
| difference(w_bit_set M, w_bit_set &D) | bbq::weighted_footprint_detector< w_bit_set > | |
| differs(int *, int *) | bbq::weighted_footprint_detector< w_bit_set > | |
| enum_h_best_sets(w_bit_set M, int j) | bbq::weighted_footprint_detector< w_bit_set > | |
| enum_h_best_w_sets(w_bit_set M, int j) | bbq::weighted_footprint_detector< w_bit_set > | |
| enum_sets(w_bit_set M, int j) | bbq::weighted_footprint_detector< w_bit_set > | |
| enum_w_sets(w_bit_set M, int j) | bbq::weighted_footprint_detector< w_bit_set > | |
| enumerate_differences(int delta) | bbq::weighted_footprint_detector< w_bit_set > | |
| enumerate_h_best_subsets() | bbq::weighted_footprint_detector< w_bit_set > | |
| enumerate_subsets() | bbq::weighted_footprint_detector< w_bit_set > | |
| get_element_array(w_bit_set M, int *E, int &l) | bbq::weighted_footprint_detector< w_bit_set > | |
| get_frag_occurences(int i, int j, match_list &) | bbq::weighted_footprint_detector< w_bit_set > | |
| get_freq() | bbq::weighted_footprint_detector< w_bit_set > | |
| get_group_occurences(int i, int j) | bbq::weighted_footprint_detector< w_bit_set > | |
| get_groups() | bbq::weighted_footprint_detector< w_bit_set > | |
| get_occurences(int i, int j) | bbq::weighted_footprint_detector< w_bit_set > | |
| get_result() | bbq::weighted_footprint_detector< w_bit_set > | |
| get_weight(int i, int j, int nu) | bbq::weighted_footprint_detector< w_bit_set > | |
| h_best_w_bound(const w_bit_set &M, const unsigned int &j) | bbq::weighted_footprint_detector< w_bit_set > | |
| increase(int *nu, int I) | bbq::weighted_footprint_detector< w_bit_set > | |
| init_arrangement_cells() | bbq::weighted_footprint_detector< w_bit_set > | |
| p_value(int i, int j, int nu) | bbq::weighted_footprint_detector< w_bit_set > | |
| print_h_results() | bbq::weighted_footprint_detector< w_bit_set > | |
| print_postscript(std::string filename) | bbq::weighted_footprint_detector< w_bit_set > | |
| print_ps_h_results(std::string &) | bbq::weighted_footprint_detector< w_bit_set > | |
| print_ps_labels(std::string filename) | bbq::weighted_footprint_detector< w_bit_set > | |
| print_ps_single_result(int *nu, std::ostream &o, w_bit_set &intersection) | bbq::weighted_footprint_detector< w_bit_set > | |
| print_result() | bbq::weighted_footprint_detector< w_bit_set > | |
| print_single_result(int *nu, w_bit_set &intersection, const float &weight) | bbq::weighted_footprint_detector< w_bit_set > | |
| print_with_names(w_bit_set &) | bbq::weighted_footprint_detector< w_bit_set > | |
| reverse_compl() | bbq::weighted_footprint_detector< w_bit_set > | |
| run(int, float) | bbq::weighted_footprint_detector< w_bit_set > | |
| set_algorithm(int A) | bbq::weighted_footprint_detector< w_bit_set > | |
| set_count_results(bool) | bbq::weighted_footprint_detector< w_bit_set > | |
| set_delta(int) | bbq::weighted_footprint_detector< w_bit_set > | |
| set_group_characters(int) | bbq::weighted_footprint_detector< w_bit_set > | |
| set_grouping(bool) | bbq::weighted_footprint_detector< w_bit_set > | |
| set_number_of_hits(int) | bbq::weighted_footprint_detector< w_bit_set > | |
| set_output_detail(bool) | bbq::weighted_footprint_detector< w_bit_set > | |
| set_postscript(bool) | bbq::weighted_footprint_detector< w_bit_set > | |
| set_progress_report(bool) | bbq::weighted_footprint_detector< w_bit_set > | |
| set_ps_filename(std::string) | bbq::weighted_footprint_detector< w_bit_set > | |
| set_reverse(bool) | bbq::weighted_footprint_detector< w_bit_set > | |
| set_weight_type(int wt) | bbq::weighted_footprint_detector< w_bit_set > | |
| set_weighted(bool) | bbq::weighted_footprint_detector< w_bit_set > | |
| test_diff_set(w_bit_set &M) | bbq::weighted_footprint_detector< w_bit_set > | |
| update_h_best_list(const float &wght, int *nu, w_bit_set &intersection) | bbq::weighted_footprint_detector< w_bit_set > | |
| w_bound(const w_bit_set &M, const unsigned int &j) | bbq::weighted_footprint_detector< w_bit_set > | |
| weighted_footprint_detector() | bbq::weighted_footprint_detector< w_bit_set > | |
| weighted_footprint_detector(int, int, char **, char **, char **, char **, int *, int *, int *) | bbq::weighted_footprint_detector< w_bit_set > | |
| ~weighted_footprint_detector() | bbq::weighted_footprint_detector< w_bit_set > | |