bbq Implementation Documentation
Main Page
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Namespace List
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Class List
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File List
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Namespace Members
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Class Members
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File Members
All
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Functions
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Variables
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Defines
a
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b
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c
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d
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f
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g
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k
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l
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m
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n
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p
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r
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s
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t
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u
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w
Here is a list of all file members with links to the files they belong to:
- a -
algorithm :
main.cpp
- b -
bounded_difference :
main.cpp
- c -
CHUNK_SIZE :
cluster_fragments.cpp
,
main.cpp
count_results :
main.cpp
- d -
delta :
main.cpp
- f -
fill_reverse_segments() :
cluster_fragments.cpp
,
main.cpp
free_all() :
cluster_fragments.cpp
,
main.cpp
- g -
group_members :
cluster_fragments.cpp
,
main.cpp
grouped :
main.cpp
groups :
cluster_fragments.cpp
,
main.cpp
- k -
k :
cluster_fragments.cpp
,
main.cpp
K :
cluster_fragments.cpp
,
main.cpp
kappa :
cluster_fragments.cpp
- l -
L :
cluster_fragments.cpp
,
main.cpp
- m -
m :
cluster_fragments.cpp
,
main.cpp
main() :
cluster_fragments.cpp
,
main.cpp
matches() :
cluster_fragments.cpp
max :
weighted_footprint_detector.cpp
- n -
n :
cluster_fragments.cpp
,
main.cpp
N :
main.cpp
num_of_group_characters :
main.cpp
num_of_hits :
main.cpp
num_of_opts :
cluster_fragments.cpp
,
main.cpp
- p -
params_good :
cluster_fragments.cpp
,
main.cpp
print_help() :
cluster_fragments.cpp
print_help_message() :
main.cpp
process_data() :
cluster_fragments.cpp
ps_file_name :
main.cpp
ps_output :
main.cpp
- r -
read_data() :
cluster_fragments.cpp
,
main.cpp
read_genome() :
main.cpp
read_parameters() :
cluster_fragments.cpp
,
main.cpp
report_progress :
main.cpp
reverse :
cluster_fragments.cpp
,
main.cpp
- s -
s :
cluster_fragments.cpp
,
main.cpp
s_names :
cluster_fragments.cpp
,
main.cpp
skip() :
cluster_fragments.cpp
,
main.cpp
stupid_user :
main.cpp
- t -
T :
main.cpp
test_unweighted() :
main.cpp
threshold :
main.cpp
- u -
use_multisets :
main.cpp
- w -
weight_type :
main.cpp
weighted :
main.cpp
write_output() :
cluster_fragments.cpp
bbq Implementation Documentation
Axel Mosig, Bioinformatics, University of Leipzig