Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,769,220 – 6,769,331 |
Length | 111 |
Max. P | 1.000000 |
Location | 6,769,220 – 6,769,331 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 65.15 |
Mean single sequence MFE | -27.18 |
Consensus MFE | -19.47 |
Energy contribution | -20.36 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.09 |
Mean z-score | -3.55 |
Structure conservation index | 0.72 |
SVM decision value | 8.05 |
SVM RNA-class probability | 1.000000 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6769220 111 + 22407834 --GAUAC--GAUACGAAGUGCAAGGAUCAAAUACUAUCAAGGAUCAAUGAUUAAUAAAUUAACAUUUCAUUUACAAUUAUAACU----GAUCCUUGACACAAUUUUCGCCGAGCAAAGA --.....--.........(((..((...((((....((((((((((((((((..(((((.........))))).))))))...)----)))))))))....))))...))..))).... ( -20.70) >DroEre_CAF1 38252 87 + 1 --------AGAUUCGAGGUGCUCGGAUCAAAUGGUGUCAAGGAUAA--------UAUC------------CUGCAGUGCUAAGU----GAUCCUUGACACAAUUUUCUCCGAGCAAAGA --------....((....((((((((..((((.(((((((((((..--------....------------..((...)).....----.))))))))))).))))..))))))))..)) ( -33.74) >DroYak_CAF1 38350 99 + 1 ACGAUACGAGAUUCGUGGUGCAAGGAUCAAAUAGUAUCAAGGAUAG--------UACA------------UUAUAAUUAAAAGAAUUGUAUCCUUGAUACAAUUUUCUCCGAGCAAAGA ((((........))))..(((..(((..((((.((((((((((...--------....------------.(((((((.....))))))))))))))))).))))..)))..))).... ( -27.10) >consensus __GAUAC_AGAUUCGAGGUGCAAGGAUCAAAUAGUAUCAAGGAUAA________UAAA____________UUACAAUUAUAAGU____GAUCCUUGACACAAUUUUCUCCGAGCAAAGA ..................(((..(((..((((.((((((((((((...........................................)))))))))))).))))..)))..))).... (-19.47 = -20.36 + 0.89)
Location | 6,769,220 – 6,769,331 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 65.15 |
Mean single sequence MFE | -29.53 |
Consensus MFE | -21.43 |
Energy contribution | -21.76 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.14 |
Mean z-score | -4.38 |
Structure conservation index | 0.73 |
SVM decision value | 7.45 |
SVM RNA-class probability | 1.000000 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6769220 111 - 22407834 UCUUUGCUCGGCGAAAAUUGUGUCAAGGAUC----AGUUAUAAUUGUAAAUGAAAUGUUAAUUUAUUAAUCAUUGAUCCUUGAUAGUAUUUGAUCCUUGCACUUCGUAUC--GUAUC-- ....(((..((...((((..(((((((((((----(((.((....((((((.........))))))..)).))))))))))))))..))))...))..))).........--.....-- ( -27.10) >DroEre_CAF1 38252 87 - 1 UCUUUGCUCGGAGAAAAUUGUGUCAAGGAUC----ACUUAGCACUGCAG------------GAUA--------UUAUCCUUGACACCAUUUGAUCCGAGCACCUCGAAUCU-------- ....((((((((..((((.(((((((((((.----.(((.((...))))------------)...--------..))))))))))).))))..))))))))..........-------- ( -34.70) >DroYak_CAF1 38350 99 - 1 UCUUUGCUCGGAGAAAAUUGUAUCAAGGAUACAAUUCUUUUAAUUAUAA------------UGUA--------CUAUCCUUGAUACUAUUUGAUCCUUGCACCACGAAUCUCGUAUCGU ....(((..(((..((((.((((((((((((..................------------....--------.)))))))))))).))))..)))..)))..(((.....)))..... ( -26.80) >consensus UCUUUGCUCGGAGAAAAUUGUGUCAAGGAUC____ACUUAUAAUUGUAA____________UAUA________UUAUCCUUGAUACUAUUUGAUCCUUGCACCUCGAAUCU_GUAUC__ ....(((..(((..((((.((((((((((((...........................................)))))))))))).))))..)))..))).................. (-21.43 = -21.76 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:38 2006