a score=0 s 2L_DroMel_CAF1 6769220 111 + 22407834 --GAUAC--GAUACGAAGUGCAAGGAUCAAAUACUAUCAAGGAUCAAUGAUUAAUAAAUUAACAUUUCAUUUACAAUUAUAACU----GAUCCUUGACACAAUUUUCGCCGAGCAAAGA s DroEre_CAF1 38252 87 + 1 --------AGAUUCGAGGUGCUCGGAUCAAAUGGUGUCAAGGAUAA--------UAUC------------CUGCAGUGCUAAGU----GAUCCUUGACACAAUUUUCUCCGAGCAAAGA s DroYak_CAF1 38350 99 + 1 ACGAUACGAGAUUCGUGGUGCAAGGAUCAAAUAGUAUCAAGGAUAG--------UACA------------UUAUAAUUAAAAGAAUUGUAUCCUUGAUACAAUUUUCUCCGAGCAAAGA