| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,078,870 – 6,078,976 |
| Length | 106 |
| Max. P | 0.909444 |
| Location | 6,078,870 – 6,078,976 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 89.88 |
| Mean single sequence MFE | -30.27 |
| Consensus MFE | -27.49 |
| Energy contribution | -27.60 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.644775 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6078870 106 + 22407834 AAAGGCAAACAGCGGAAAAUCGAAAAAUCAGGCGGCAAGACCGCAACAACUGCAGAGAAGCAUGGAUGCAGAGAG--------GCGGAGUGCCGGGAAGUGCUGUCUAGCUAUU ...(((..((((((.......((....))...(((((...((((.....(((((............)))))....--------))))..))))).....))))))...)))... ( -31.40) >DroSec_CAF1 40560 108 + 1 ------AAACAGCGGAAAAUCGAAAAAUCAGGCGGCAAGACCGCAACAACUGCAGAGAAGCAGGGAUGCAGAGAGGCGGAGAGGCGGAGUGCUGGGGAGUGCUGUCUAGCUAUU ------....(((........((....))((((((((...((((.....(((((............)))))....))))...(((.....)))......)))))))).)))... ( -28.40) >DroSim_CAF1 41236 108 + 1 ------AAACAGCGGAAAAUCGAAAAAUCAGGCGGCAAGACCGCAACAACUGCAGAGAAGCAGGGAUGCAGAGAGGCGGAGAGGCGGAGUGCCGGGGAGUGCUGUCUAGCUAUU ------....(((........((....))((((((((...((((.....(((((............)))))....))))...(((.....)))......)))))))).)))... ( -31.00) >consensus ______AAACAGCGGAAAAUCGAAAAAUCAGGCGGCAAGACCGCAACAACUGCAGAGAAGCAGGGAUGCAGAGAGGCGGAGAGGCGGAGUGCCGGGGAGUGCUGUCUAGCUAUU ..........(((........((....))((((((((...(((((....((((......))))...)))...............(((....)))))...)))))))).)))... (-27.49 = -27.60 + 0.11)
| Location | 6,078,870 – 6,078,976 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 89.88 |
| Mean single sequence MFE | -28.57 |
| Consensus MFE | -24.03 |
| Energy contribution | -24.69 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.84 |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.909444 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6078870 106 - 22407834 AAUAGCUAGACAGCACUUCCCGGCACUCCGC--------CUCUCUGCAUCCAUGCUUCUCUGCAGUUGUUGCGGUCUUGCCGCCUGAUUUUUCGAUUUUCCGCUGUUUGCCUUU ....((.(((((((......(((((..((((--------..(.(((((............)))))..)..))))...)))))..(((....))).......))))))))).... ( -32.10) >DroSec_CAF1 40560 108 - 1 AAUAGCUAGACAGCACUCCCCAGCACUCCGCCUCUCCGCCUCUCUGCAUCCCUGCUUCUCUGCAGUUGUUGCGGUCUUGCCGCCUGAUUUUUCGAUUUUCCGCUGUUU------ .......(((((((........(((..((((..(...((......))....((((......))))..)..))))...)))....(((....))).......)))))))------ ( -24.10) >DroSim_CAF1 41236 108 - 1 AAUAGCUAGACAGCACUCCCCGGCACUCCGCCUCUCCGCCUCUCUGCAUCCCUGCUUCUCUGCAGUUGUUGCGGUCUUGCCGCCUGAUUUUUCGAUUUUCCGCUGUUU------ .......(((((((......(((((..((((..(...((......))....((((......))))..)..))))...)))))..(((....))).......)))))))------ ( -29.50) >consensus AAUAGCUAGACAGCACUCCCCGGCACUCCGCCUCUCCGCCUCUCUGCAUCCCUGCUUCUCUGCAGUUGUUGCGGUCUUGCCGCCUGAUUUUUCGAUUUUCCGCUGUUU______ .......(((((((......(((((..((((..............(((...((((......)))).))).))))...)))))..(((....))).......)))))))...... (-24.03 = -24.69 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:45 2006