Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,943,586 – 2,943,690 |
Length | 104 |
Max. P | 0.560257 |
Location | 2,943,586 – 2,943,690 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 85.33 |
Mean single sequence MFE | -33.40 |
Consensus MFE | -24.61 |
Energy contribution | -24.99 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.10 |
Mean z-score | -1.48 |
Structure conservation index | 0.74 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.560257 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2943586 104 + 22407834 AAGCUUUUCCUCUGGCCAA-----CUGGUCGUCUUCCAUUUAUUUUCGGUGACGUGCAUAAACUAUUUGCAAGCACUGUUCUUG---GUUGGGGGCAGGGA-AGUUCCUGCGA .........(((..(((((-----.(((.......)))........(((((...((((.........))))..)))))...)))---))..)))((((((.-...)))))).. ( -33.00) >DroSim_CAF1 60453 108 + 1 AAGCUUCUCCACUGGCCGA-----CUCGUCGUCUUCCAUUUAUUUUCGGUGACGUGCAUAAACUAUUUGCAAGCACUGUUGCUGGCGGUUGGGGGCAGGGAAAGUUCCUGCGA ......(((((.(.(((((-----(.....))).............(((((...((((.........))))..))))).....))).).)))))(((((((...))))))).. ( -34.60) >DroEre_CAF1 60843 104 + 1 AAGCUUUUCCUCCGCUCGACUCGACUCGCCGUCUUCCAUUUAUUUUCGGUGACGUGCAUAAACUAUUUGCAAGCACUGUU-------GU-GGGGGCAGGA-AAGUUCCUCUGA .((((((((((((((.......(((.....))).............(((((...((((.........))))..)))))..-------))-)))))...))-)))))....... ( -27.10) >DroYak_CAF1 60922 107 + 1 AAGCUUUUCCUCUGGCCGACUCGACUCGUCGCCUUCCAUUUAUUUUCGGUGACGUGCAUAAACUAUUUGCAAGCACUGUUA------GUGGGGGGCAGGAAAAGUUCCUCCGA .((((((((((......(((.......)))((((((((((......(((((...((((.........))))..)))))..)------)))))))))))))))))))....... ( -38.90) >consensus AAGCUUUUCCUCUGGCCGA_____CUCGUCGUCUUCCAUUUAUUUUCGGUGACGUGCAUAAACUAUUUGCAAGCACUGUU_______GUUGGGGGCAGGAAAAGUUCCUCCGA .(((((((((...(((...........)))((((((.((.......(((((...((((.........))))..))))).........)).)))))).)))))))))....... (-24.61 = -24.99 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:27 2006