>X4929|ORF|3688350..3689027|2|(gi|260681769|ref|NC_013315.1|)
GGGTGA
>4799|ORF|3497315..3497959|2|(gi|260681769|ref|NC_013315.1|)
AAATGC
>X4765|ORF|3441644..3443590|2|(gi|260681769|ref|NC_013315.1|)
TAGATA
>X4759|ORF|3429975..3431843|2|(gi|260681769|ref|NC_013315.1|)
GTAATA
>X4297|ORF|2736619..2737833|2|(gi|260681769|ref|NC_013315.1|)
ATAGAA
>X4134|ORF|2500367..2501257|2|(gi|260681769|ref|NC_013315.1|)
ATAGCA
>X3750|ORF|1774907..1775866|2|(gi|260681769|ref|NC_013315.1|)
TGTTAA
>X3711|ORF|1688014..1690434|1|(gi|260681769|ref|NC_013315.1|)
TAAAAG
>X3654|ORF|1576675..1577193|1|(gi|260681769|ref|NC_013315.1|)
ATTAAA
>X3531|ORF|1289506..1290324|2|(gi|260681769|ref|NC_013315.1|)
AAAGGA
>X3394|ORF|923412..924107|1|(gi|260681769|ref|NC_013315.1|)
TATGAA
>X3385|ORF|895570..896292|1|(gi|260681769|ref|NC_013315.1|)
GAATAA
>3378|ORF|880160..880564|1|(gi|260681769|ref|NC_013315.1|)
GATAAA
>X3340|ORF|741886..742662|2|(gi|260681769|ref|NC_013315.1|)
GATGCA
>X3291|ORF|608452..609486|2|(gi|260681769|ref|NC_013315.1|)
CAATCA
>X3286|ORF|601016..601621|1|(gi|260681769|ref|NC_013315.1|)
TTTATT
>X3232|ORF|460834..461724|2|(gi|260681769|ref|NC_013315.1|)
ATAGCA
>X3175|ORF|314788..315522|1|(gi|260681769|ref|NC_013315.1|)
TGGTGA
>3157|ORF|258361..259233|2|(gi|260681769|ref|NC_013315.1|)
GCAATG
>3056|CDS|4081793..4083253|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701279|ref|YP_001090176.1| putative peptidase [Clostridium difficile 630])
AAGTGA
>3032|CDS|4055143..4057311|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701250|ref|YP_001090147.1| putative ABC transporter, permease protein [Clostridium difficile 630])
AAGGAG
>3026|CDS|4050866..4051246|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126701244|ref|YP_001090141.1| hypothetical protein CD3618 [Clostridium difficile 630])
TGGTAT
>3022|CDS|4017537..4018151|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701240|ref|YP_001090137.1| hypothetical protein CD3614 [Clostridium difficile 630])
AAACTA
>3005|CDS|3998842..4000068|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126701222|ref|YP_001090119.1| aminopeptidase [Clostridium difficile 630])
GTAATT
>3004|CDS|3997331..3998242|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701221|ref|YP_001090118.1| hypothetical protein CD3594 [Clostridium difficile 630])
AATCAC
>2997|CDS|3985360..3986043|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701214|ref|YP_001090111.1| two-component response regulator [Clostridium difficile 630])
TGTTTC
>2993|CDS|3978495..3979364|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126701208|ref|YP_001090105.1| hypothetical protein CD3581 [Clostridium difficile 630])
GATGGG
>2952|CDS|3934869..3935450|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701166|ref|YP_001090063.1| spore maturation protein A [Clostridium difficile 630])
TTTTTC
>2950|CDS|3931999..3933933|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701164|ref|YP_001090061.1| methionyl-tRNA synthetase [Clostridium difficile 630])
TGCGAG
>2948|CDS|3930431..3930859|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701162|ref|YP_001090059.1| putative phosphonate metabolism protein [Clostridium difficile 630])
CAATGC
>2931|CDS|3909808..3910683|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701141|ref|YP_001090038.1| purine operon repressor [Clostridium difficile 630])
ATAGAT
>2853|CDS|3810370..3811881|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701058|ref|YP_001089955.1| cobyric acid synthase [Clostridium difficile 630])
GAGATT
>2823|CDS|3766785..3768263|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126701027|ref|YP_001089924.1| putative cardiolipin synthetase [Clostridium difficile 630])
ATCAGC
>2803|CDS|3735429..3735881|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700978|ref|YP_001089875.1| transcription regulator AsnC [Clostridium difficile 630])
AAGATA
>2728|CDS|3636884..3639547|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700875|ref|YP_001089772.1| valyl-tRNA synthetase [Clostridium difficile 630])
ATCTAA
>2724|CDS|3630870..3631733|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700870|ref|YP_001089767.1| hypothetical protein CD3251 [Clostridium difficile 630])
CTATAA
>2718|CDS|3622310..3624187|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700863|ref|YP_001089760.1| proline reductase subunit proprotein [Clostridium difficile 630])
GACGAA
>2707|CDS|3608674..3610311|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700850|ref|YP_001089747.1| exosporium glycoprotein [Clostridium difficile 630])
ATAGAA
>2706|CDS|3607337..3608086|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700849|ref|YP_001089746.1| dihydrodipicolinate reductase [Clostridium difficile 630])
GATATA
>2700|CDS|3599053..3600243|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700842|ref|YP_001089739.1| L-serine dehydratase [Clostridium difficile 630])
ATTTCT
>2694|CDS|3591502..3593739|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700836|ref|YP_001089733.1| putative nogalamycin resistance protein [Clostridium difficile 630])
CAAAAT
>2691|CDS|3587707..3588435|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700833|ref|YP_001089730.1| AraC family transcription regulator [Clostridium difficile 630])
TGCAAA
>2681|CDS|3575896..3576738|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700820|ref|YP_001089717.1| ABC transporter, ATP-binding protein [Clostridium difficile 630])
GGATGT
>2676|CDS|3566722..3567639|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700813|ref|YP_001089710.1| AraC family transcription regulator [Clostridium difficile 630])
TATAGA
>2670|CDS|3553330..3553704|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700806|ref|YP_001089703.1| putative regulatory endoribonuclease [Clostridium difficile 630])
AATGGC
>2650|CDS|3522997..3523491|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700786|ref|YP_001089683.1| putative phosphatidylethanolamine-binding regulatory protein [Clostridium difficile 630])
GCTATT
>2648|CDS|3519169..3521301|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700783|ref|YP_001089680.1| ribonuclease R [Clostridium difficile 630])
GAAAAA
>2647|CDS|3517584..3518072|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700782|ref|YP_001089679.1| hypothetical protein CD3163 [Clostridium difficile 630])
TTTTTA
>2635|CDS|3502797..3502994|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700770|ref|YP_001089667.1| putative phage transcriptional regulator [Clostridium difficile 630])
TAGTAA
>2614|CDS|3434018..3435202|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700736|ref|YP_001089633.1| putative glycosyltransferase [Clostridium difficile 630])
CAAGTT
>2610|CDS|3426272..3427477|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700731|ref|YP_001089628.1| hypothetical protein CD3114 [Clostridium difficile 630])
ATTATA
>2587|CDS|3392488..3393207|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700707|ref|YP_001089604.1| GntR family transcriptional regulator [Clostridium difficile 630])
CAAAGA
>2572|CDS|3360414..3360977|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700690|ref|YP_001089587.1| hypothetical protein CD3073 [Clostridium difficile 630])
TCTAGT
>2570|CDS|3356861..3358936|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700688|ref|YP_001089585.1| glycosyl hydrolase [Clostridium difficile 630])
GGAGAG
>2564|CDS|3351279..3352826|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700682|ref|YP_001089579.1| xylulose kinase [Clostridium difficile 630])
TAATAC
>2544|CDS|3326163..3327140|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700660|ref|YP_001089557.1| hypothetical protein CD3042 [Clostridium difficile 630])
AGATAA
>2532|CDS|3309549..3311123|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700648|ref|YP_001089545.1| PTS system, maltose and glucose-specific IIBC component [Clostridium difficile 630])
GCATGT
>2511|CDS|3280063..3281034|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700625|ref|YP_001089522.1| 2-keto-3-deoxygluconate permease [Clostridium difficile 630])
CAATAA
>2499|CDS|3264423..3265049|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700613|ref|YP_001089510.1| hypothetical protein CD2992 [Clostridium difficile 630])
TAATGG
>2495|CDS|3260771..3261460|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700609|ref|YP_001089506.1| two-component system esponse regulator [Clostridium difficile 630])
TAAATA
>2475|CDS|3234233..3236884|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700586|ref|YP_001089483.1| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium difficile 630])
TATTAT
>2440|CDS|3190627..3192006|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700483|ref|YP_001089380.1| putative regulatory protease [Clostridium difficile 630])
TGTAGG
>2437|CDS|3180135..3182177|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700479|ref|YP_001089376.1| putative sigma-54-dependent transcriptional regulator [Clostridium difficile 630])
TAAGGG
>2416|CDS|3157354..3158277|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700458|ref|YP_001089355.1| nitrilase (carbon-nitrogen hydrolase) [Clostridium difficile 630])
TAATTG
>2414|CDS|3153279..3154547|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700456|ref|YP_001089353.1| seryl-tRNA synthetase [Clostridium difficile 630])
GTTTCT
>2404|CDS|3135814..3136473|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700446|ref|YP_001089343.1| hypothetical protein CD2830 [Clostridium difficile 630])
AAACCT
>2397|CDS|3126232..3127605|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700439|ref|YP_001089336.1| hypothetical protein CD2823 [Clostridium difficile 630])
GCAGAA
>2384|CDS|3108212..3108532|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700425|ref|YP_001089322.1| hypothetical protein CD2809 [Clostridium difficile 630])
TTCGAA
>2383|CDS|3107383..3108009|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700424|ref|YP_001089321.1| hypothetical protein CD2808 [Clostridium difficile 630])
GACTTT
>2366|CDS|3073652..3074044|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700404|ref|YP_001089301.1| putative cell wall teichoic acid glycosylation protein [Clostridium difficile 630])
AATTTT
>2336|CDS|3030580..3032289|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700371|ref|YP_001089268.1| phosphoenolpyruvate-protein phosphotransferase [Clostridium difficile 630])
GACTTT
>2334|CDS|3027349..3028776|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700367|ref|YP_001089264.1| hypothetical protein CD2751 [Clostridium difficile 630])
CAAAAA
>2331|CDS|3024543..3025919|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700364|ref|YP_001089261.1| putative radical SAM family protein [Clostridium difficile 630])
AAGGAG
>2308|CDS|2995957..2997198|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700341|ref|YP_001089238.1| putative serine hydroxymethyltransferase [Clostridium difficile 630])
ATAATA
>2307|CDS|2994537..2995631|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700340|ref|YP_001089237.1| putative UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [Clostridium difficile 630])
TAGAGA
>2280|CDS|2951775..2952440|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700313|ref|YP_001089210.1| hypothetical protein CD2699 [Clostridium difficile 630])
GGGGGA
>2263|CDS|2932108..2935644|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700296|ref|YP_001089193.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile 630])
AATTAG
>2244|CDS|2905911..2907173|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700275|ref|YP_001089172.1| peptidase [Clostridium difficile 630])
TACTTC
>2212|CDS|2861948..2862985|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700239|ref|YP_001089136.1| hypothetical protein CD2625 [Clostridium difficile 630])
GAAGAA
>2200|CDS|2848089..2849162|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700227|ref|YP_001089124.1| peptidase [Clostridium difficile 630])
TGTGTA
>2198|CDS|2845121..2845816|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700225|ref|YP_001089122.1| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Clostridium difficile 630])
TATGTT
>2196|CDS|2838232..2838975|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700223|ref|YP_001089120.1| putative response regulator [Clostridium difficile 630])
CATTAT
>2158|CDS|2791642..2792400|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700183|ref|YP_001089080.1| MerR family transcriptional regulator [Clostridium difficile 630])
ACAAGA
>2157|CDS|2790950..2791423|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700182|ref|YP_001089079.1| hypothetical protein CD2563 [Clostridium difficile 630])
CTAGTA
>2156|CDS|2790349..2790534|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700181|ref|YP_001089078.1| 50S ribosomal protein L28 [Clostridium difficile 630])
TTGAAA
>2151|CDS|2781938..2783854|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700174|ref|YP_001089071.1| bifunctional protein [Clostridium difficile 630])
TATAAA
>2136|CDS|2761601..2762482|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700155|ref|YP_001089052.1| putative lipoprotein [Clostridium difficile 630])
TTGAAA
>2126|CDS|2747682..2748191|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700142|ref|YP_001089039.1| recombination regulator RecX [Clostridium difficile 630])
AAAAAG
>2122|CDS|2742906..2745323|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700138|ref|YP_001089035.1| leucyl-tRNA synthetase [Clostridium difficile 630])
ATATAG
>2109|CDS|2723532..2726168|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700119|ref|YP_001089016.1| cation-transporting ATPase [Clostridium difficile 630])
AAGTGA
>2100|CDS|2708234..2709175|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700108|ref|YP_001089005.1| mannose-6-phosphate isomerase [Clostridium difficile 630])
GTTCTC
>2093|CDS|2698940..2699995|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700100|ref|YP_001088997.1| hypothetical protein CD2483 [Clostridium difficile 630])
TTAAAT
>2092|CDS|2698505..2698873|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700099|ref|YP_001088996.1| putative lipoprotein [Clostridium difficile 630])
TATAAT
>2087|CDS|2693438..2694340|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700094|ref|YP_001088991.1| hypothetical protein CD2477 [Clostridium difficile 630])
AGTGTT
>2066|CDS|2666890..2667624|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700072|ref|YP_001088969.1| hypothetical protein CD2455 [Clostridium difficile 630])
TGATAT
>2015|CDS|2605853..2608078|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700019|ref|YP_001088916.1| putative DNA topoisomerase [Clostridium difficile 630])
AGAGTT
>2011|CDS|2602549..2602755|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700014|ref|YP_001088911.1| hypothetical protein CD2399 [Clostridium difficile 630])
GGAGGT
>2006|CDS|2595512..2596213|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700007|ref|YP_001088904.1| hypothetical protein CD2392 [Clostridium difficile 630])
GGTATC
>2001|CDS|2585886..2586302|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700001|ref|YP_001088898.1| hypothetical protein CD2386 [Clostridium difficile 630])
AAATTG
>1957|CDS|2529002..2530423|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699952|ref|YP_001088849.1| PTS system, mannitol-specific IIBC component [Clostridium difficile 630])
ATTAGA
>1950|CDS|2519417..2519872|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699945|ref|YP_001088842.1| PTS system, galactitol-specific IIA component [Clostridium difficile 630])
ACTAAA
>1931|CDS|2499559..2499906|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699925|ref|YP_001088822.1| hypothetical protein CD2307 [Clostridium difficile 630])
TTTAGA
>1903|CDS|2459834..2460874|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699881|ref|YP_001088778.1| hypothetical protein CD2264 [Clostridium difficile 630])
TTGAGA
>1899|CDS|2451571..2452602|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699875|ref|YP_001088772.1| hypothetical protein CD2258 [Clostridium difficile 630])
AATGTT
>1898|CDS|2450470..2451516|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699874|ref|YP_001088771.1| putative PTS system, EIIC component [Clostridium difficile 630])
AAACTA
>1886|CDS|2432827..2434221|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699862|ref|YP_001088759.1| asparaginyl-tRNA synthetase [Clostridium difficile 630])
AAATGC
>1860|CDS|2406884..2407342|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699829|ref|YP_001088726.1| MarR family transcriptional regulator [Clostridium difficile 630])
ATGAAA
>1802|CDS|2332237..2332485|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699769|ref|YP_001088666.1| hypothetical protein CD2153 [Clostridium difficile 630])
CAAAAA
>1764|CDS|2274869..2276242|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699724|ref|YP_001088621.1| putative xanthine/uracil permease [Clostridium difficile 630])
ACTTTG
>1718|CDS|2214100..2215761|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699676|ref|YP_001088573.1| glutaminyl-tRNA synthetase [Clostridium difficile 630])
AAACCA
>1690|CDS|2181668..2182039|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699640|ref|YP_001088537.1| GntR family transcriptional regulator [Clostridium difficile 630])
ATATAA
>1686|CDS|2176029..2177453|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699636|ref|YP_001088533.1| transporter [Clostridium difficile 630])
AAAAAT
>1679|CDS|2168406..2169344|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699611|ref|YP_001088508.1| major intracellular serine protease [Clostridium difficile 630])
GAATAA
>1678|CDS|2167502..2167927|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699610|ref|YP_001088507.1| flavodoxin [Clostridium difficile 630])
AAAACG
>1667|CDS|2153634..2154182|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699596|ref|YP_001088493.1| putative tryptophan transport protein [Clostridium difficile 630])
TATCAA
>1635|CDS|2109202..2110398|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699562|ref|YP_001088459.1| hypothetical protein CD1953 [Clostridium difficile 630])
CTATAC
>1615|CDS|2088081..2089205|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699541|ref|YP_001088438.1| putative tyrosine recombinase [Clostridium difficile 630])
GATTGA
>1590|CDS|2059010..2060605|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699515|ref|YP_001088412.1| site-specific recombinases [Clostridium difficile 630])
TCTTTA
>1566|CDS|2034312..2035118|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699446|ref|YP_001088343.1| shikimate dehydrogenase [Clostridium difficile 630])
ATTAGA
>1549|CDS|2011944..2013638|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699428|ref|YP_001088325.1| adenine deaminase [Clostridium difficile 630])
TAAATT
>1523|CDS|1982885..1983838|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699401|ref|YP_001088298.1| putative L-threonine dehydrogenase [Clostridium difficile 630])
GGAATA
>1496|CDS|1950817..1951515|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699373|ref|YP_001088270.1| hypothetical protein CD1764 [Clostridium difficile 630])
AATGGA
>1494|CDS|1949802..1950218|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699371|ref|YP_001088268.1| hypothetical protein CD1762 [Clostridium difficile 630])
CATAAG
>1480|CDS|1933244..1934230|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699354|ref|YP_001088251.1| adenosine deaminase [Clostridium difficile 630])
TTGAAT
>1461|CDS|1911082..1911888|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699331|ref|YP_001088228.1| AraC family transcription regulator [Clostridium difficile 630])
AAGTAT
>1439|CDS|1886425..1887525|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699306|ref|YP_001088203.1| riboflavin biosynthesis protein [Clostridium difficile 630])
TGTTTT
>1422|CDS|1870977..1871942|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699288|ref|YP_001088185.1| inosine-uridine preferring nucleoside hydrolase [Clostridium difficile 630])
GGAAGG
>1407|CDS|1858713..1859732|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699273|ref|YP_001088170.1| hypothetical protein CD1668 [Clostridium difficile 630])
ATATAA
>1393|CDS|1833194..1833988|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699257|ref|YP_001088154.1| putative lipoprotein [Clostridium difficile 630])
ATTCCT
>1363|CDS|1794838..1795452|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699226|ref|YP_001088123.1| putative lipoprotein [Clostridium difficile 630])
TAGAAA
>1348|CDS|1776688..1777041|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699210|ref|YP_001088107.1| GntR family transcriptional regulator [Clostridium difficile 630])
AATAGA
>1341|CDS|1771396..1772187|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699203|ref|YP_001088100.1| putative phosphomethylpyrimidine kinase [Clostridium difficile 630])
TTTTAT
>1328|CDS|1752650..1752916|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699187|ref|YP_001088084.1| hypothetical protein CD1583A [Clostridium difficile 630])
AACAGC
>1325|CDS|1748219..1749433|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699183|ref|YP_001088080.1| homoserine dehydrogenase [Clostridium difficile 630])
TTGAAA
>1311|CDS|1669819..1670055|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699167|ref|YP_001088064.1| hypothetical protein CD1564 [Clostridium difficile 630])
AAGAAT
>1295|CDS|1653172..1653822|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699150|ref|YP_001088047.1| putative hemolysin-like membrane protein [Clostridium difficile 630])
TTATTG
>1286|CDS|1639103..1639951|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699139|ref|YP_001088036.1| putative 3-mercaptopyruvate sulfurtransferase [Clostridium difficile 630])
ACTGGT
>1282|CDS|1633479..1634150|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699135|ref|YP_001088032.1| two-component response regulator [Clostridium difficile 630])
GGTTAT
>1274|CDS|1622099..1623304|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699125|ref|YP_001088022.1| tyrosyl-tRNA synthetase [Clostridium difficile 630])
GAGCTA
>1272|CDS|1620045..1620482|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699123|ref|YP_001088020.1| putative acetyltransferase [Clostridium difficile 630])
AAAATG
>1259|CDS|1601943..1603265|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699109|ref|YP_001088006.1| putative drug/sodium antiporters [Clostridium difficile 630])
AGATAT
>1240|CDS|1580702..1581298|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699090|ref|YP_001087987.1| putative lipoprotein [Clostridium difficile 630])
ATAATA
>1190|CDS|1515184..1515315|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699032|ref|YP_001087929.1| hypothetical protein CD1428A [Clostridium difficile 630])
CGAACA
>1179|CDS|1499409..1499840|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699019|ref|YP_001087916.1| hypothetical protein CD1416 [Clostridium difficile 630])
GACATT
>1176|CDS|1494702..1496129|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699015|ref|YP_001087912.1| sigma-54 dependent regulatory protein [Clostridium difficile 630])
ACTAAT
>1165|CDS|1480104..1480832|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699004|ref|YP_001087901.1| glycerophosphoryl diester phosphodiesterase [Clostridium difficile 630])
CAATAC
>1152|CDS|1466239..1467303|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698991|ref|YP_001087888.1| putative chloromuconate cycloisomerase [Clostridium difficile 630])
ATAGAA
>1148|CDS|1461331..1462119|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698987|ref|YP_001087884.1| hypothetical protein CD1384 [Clostridium difficile 630])
GAACAT
>1092|CDS|1401748..1403526|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698929|ref|YP_001087826.1| hypothetical protein CD1330 [Clostridium difficile 630])
TCAAAA
>1057|CDS|1360973..1361806|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698890|ref|YP_001087787.1| AraC family transcription regulator [Clostridium difficile 630])
AACAAC
>1052|CDS|1356066..1356800|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698885|ref|YP_001087782.1| putative membrane-bound metal-dependent hydrolase [Clostridium difficile 630])
TTCAAT
>1046|CDS|1349108..1351744|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698879|ref|YP_001087776.1| alanyl-tRNA synthetase [Clostridium difficile 630])
ACACAA
>1006|CDS|1303328..1303834|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698836|ref|YP_001087733.1| putative teicoplanin resistance protein [Clostridium difficile 630])
TTTTTG
>1002|CDS|1298761..1299141|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698832|ref|YP_001087729.1| hypothetical protein CD1235 [Clostridium difficile 630])
CTTGAA
>947|CDS|1233611..1234804|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698770|ref|YP_001087667.1| acetate kinase [Clostridium difficile 630])
AGATTG
>930|CDS|1213783..1214973|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698752|ref|YP_001087649.1| putative anaerobic nitric oxide reductase flavorubredoxin [Clostridium difficile 630])
AAAATT
>901|CDS|1173216..1173434|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698717|ref|YP_001087614.1| hypothetical protein CD1124A [Clostridium difficile 630])
TAATAA
>886|CDS|1153774..1154505|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698667|ref|YP_001087564.1| putative lipoprotein [Clostridium difficile 630])
ACTTTA
>885|CDS|1152510..1153412|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698666|ref|YP_001087563.1| LysR family transcriptional regulator [Clostridium difficile 630])
GAAATT
>868|CDS|1136747..1137169|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698647|ref|YP_001087544.1| hypothetical protein CD1063 [Clostridium difficile 630])
TACTAC
>867|CDS|1136351..1136575|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698646|ref|YP_001087543.1| acyl carrier protein [Clostridium difficile 630])
TCGAAG
>860|CDS|1128062..1129195|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698638|ref|YP_001087535.1| butyryl-CoA dehydrogenase [Clostridium difficile 630])
GGAAAA
>831|CDS|1076163..1076699|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698607|ref|YP_001087504.1| putative transcriptional regulator [Clostridium difficile 630])
CGCCAC
>830|CDS|1075038..1075724|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698606|ref|YP_001087503.1| hypothetical protein CD1022 [Clostridium difficile 630])
AATATA
>824|CDS|1066322..1067149|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698600|ref|YP_001087497.1| MerR family transcriptional regulator [Clostridium difficile 630])
AGTTAA
>663|CDS|889783..890040|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698367|ref|YP_001087264.1| putative metal-binding protein [Clostridium difficile 630])
ATCACT
>658|CDS|884224..884919|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698362|ref|YP_001087259.1| hypothetical protein CD0782 [Clostridium difficile 630])
AATACC
>657|CDS|881320..884010|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698361|ref|YP_001087258.1| penicillin-binding protein [Clostridium difficile 630])
TCCAGC
>653|CDS|876362..877201|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698357|ref|YP_001087254.1| hypothetical protein CD0777 [Clostridium difficile 630])
AAGTAA
>637|CDS|855350..857578|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698339|ref|YP_001087236.1| formate acetyltransferase [Clostridium difficile 630])
GTAAAA
>622|CDS|834331..835116|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698324|ref|YP_001087221.1| putative chemotaxis protein [Clostridium difficile 630])
GTGGTA
>621|CDS|833133..833894|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698323|ref|YP_001087220.1| DeoR family transcriptional regulator [Clostridium difficile 630])
CATAGC
>618|CDS|828780..829874|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698320|ref|YP_001087217.1| putative aminotransferase [Clostridium difficile 630])
AAAAAA
>617|CDS|827661..828170|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698319|ref|YP_001087216.1| hypothetical protein CD0739 [Clostridium difficile 630])
ATGAGC
>586|CDS|789324..790772|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698287|ref|YP_001087184.1| putative aminoacyl-histidine dipeptidase [Clostridium difficile 630])
GAACCA
>584|CDS|785560..786378|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698285|ref|YP_001087182.1| putative reductase [Clostridium difficile 630])
GAAATG
>575|CDS|771696..773069|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698275|ref|YP_001087172.1| cation transport protein [Clostridium difficile 630])
ATGGTT
>553|CDS|737279..737746|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698250|ref|YP_001087147.1| putative glyoxalase [Clostridium difficile 630])
AAATAG
>550|CDS|732389..733102|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698247|ref|YP_001087144.1| two-component response regulator [Clostridium difficile 630])
GATATA
>543|CDS|718474..726603|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698240|ref|YP_001087137.1| toxin A [Clostridium difficile 630])
CCTGGG
>508|CDS|665420..665674|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698201|ref|YP_001087098.1| putative phage-related regulatory protein [Clostridium difficile 630])
GAAAAT
>507|CDS|664622..664840|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698199|ref|YP_001087096.1| hypothetical protein CD0622 [Clostridium difficile 630])
ATCATT
>497|CDS|651546..652112|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698187|ref|YP_001087084.1| hypothetical protein CD0609 [Clostridium difficile 630])
CTAATA
>492|CDS|642286..642816|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698179|ref|YP_001087076.1| methylated-DNA--protein-cysteine methyltransferase 1 [Clostridium difficile 630])
AAGGGA
>489|CDS|640350..640568|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698174|ref|YP_001087071.1| hypothetical protein CD0596 [Clostridium difficile 630])
GGGTAA
>480|CDS|622333..622605|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698165|ref|YP_001087062.1| hypothetical protein CD0587 [Clostridium difficile 630])
TAATAT
>401|CDS|505982..506236|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698052|ref|YP_001086949.1| hypothetical protein CD0476 [Clostridium difficile 630])
TCTAAG
>397|CDS|502383..502766|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698047|ref|YP_001086944.1| penicillinase repressor [Clostridium difficile 630])
CTAAGG
>383|CDS|482799..483512|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698033|ref|YP_001086930.1| hypothetical protein CD0457 [Clostridium difficile 630])
TTTAAA
>363|CDS|3435589..3437199|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698008|ref|YP_001086905.1| putative recombinase [Clostridium difficile 630])
AAAAGT
>356|CDS|451549..452472|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126697972|ref|YP_001086869.1| putative fructose-bisphosphate aldolase [Clostridium difficile 630])
AACTCT
>348|CDS|441836..443032|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697964|ref|YP_001086861.1| isocaprenoyl-CoA:2-hydroxyisocaproate CoA-transferase [Clostridium difficile 630])
GTTGTA
>347|CDS|440164..441159|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126697963|ref|YP_001086860.1| (R)-2-hydroxyisocaproate dehydrogenase [Clostridium difficile 630])
AATAGA
>288|CDS|376909..377754|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126697883|ref|YP_001086780.1| hypothetical protein CD0311 [Clostridium difficile 630])
AAGAAA
>271|CDS|353444..354535|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697864|ref|YP_001086761.1| DNA-binding protein [Clostridium difficile 630])
TTTATT
>256|CDS|337552..338679|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697846|ref|YP_001086743.1| putative 1,3-propanediol dehydrogenase [Clostridium difficile 630])
CCATAA
>227|CDS|311075..311395|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697816|ref|YP_001086713.1| flagellar basal-body rod protein [Clostridium difficile 630])
ATCAAT
>180|CDS|239408..240427|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697756|ref|YP_001086653.1| putative cell wall hydrolase [Clostridium difficile 630])
CAAAAA
>166|CDS|223561..225471|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126697742|ref|YP_001086639.1| putative ABC transporter, ATP-binding protein [Clostridium difficile 630])
AAGAAT
>164|CDS|221373..222023|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697740|ref|YP_001086637.1| putative cyclic nucleotide-binding protein [Clostridium difficile 630])
TTTTTG
>160|CDS|215493..215783|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697736|ref|YP_001086633.1| hypothetical protein CD0164 [Clostridium difficile 630])
AGATGG
>153|CDS|207549..208013|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697729|ref|YP_001086626.1| putative glyoxalase [Clostridium difficile 630])
TGAATC
>152|CDS|204380..205339|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697728|ref|YP_001086625.1| putative membrane-associated CAAX amino terminal protease [Clostridium difficile 630])
ATCAAG
>106|CDS|152025..152861|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697681|ref|YP_001086578.1| hypothetical protein CD0110 [Clostridium difficile 630])
GGTATA
>104|CDS|141444..143792|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697679|ref|YP_001086576.1| anaerobic ribonucleoside triphosphate reductase [Clostridium difficile 630])
TAAAAC
>103|CDS|139890..141071|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126697678|ref|YP_001086575.1| aspartate aminotransferase [Clostridium difficile 630])
ATAAAA
>92|CDS|119319..119687|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697666|ref|YP_001086563.1| 30S ribosomal protein S13 [Clostridium difficile 630])
TAAAAA
>78|CDS|112047..112352|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697651|ref|YP_001086548.1| 50S ribosomal protein L24 [Clostridium difficile 630])
AAAGAA
>67|CDS|106326..106634|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697639|ref|YP_001086536.1| 30S ribosomal protein S10 [Clostridium difficile 630])
AAATAA
>63|CDS|92748..93533|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697632|ref|YP_001086529.1| NADP-dependent 7-alpha-hydroxysteroid dehydrogenase [Clostridium difficile 630])
AATATA
>49|CDS|76919..78397|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697617|ref|YP_001086514.1| glutamyl-tRNA synthetase [Clostridium difficile 630])
AATAAT
>47|CDS|73197..74909|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697615|ref|YP_001086512.1| prolyl-tRNA synthetase [Clostridium difficile 630])
TTAGGT
>38|CDS|63694..66639|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697606|ref|YP_001086503.1| putative transcription antiterminator [Clostridium difficile 630])
AAAATA
>29|CDS|51548..52390|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126697597|ref|YP_001086494.1| AraC family transcription regulator [Clostridium difficile 630])
AAAAAA
>18|CDS|34028..34438|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697586|ref|YP_001086483.1| hypothetical protein CD0020 [Clostridium difficile 630])
AGACAA
>17|CDS|23422..24624|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126697585|ref|YP_001086482.1| putative glycosyl transferase [Clostridium difficile 630])
ATAATT
>13|CDS|17811..19079|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697580|ref|YP_001086477.1| seryl-tRNA synthetase [Clostridium difficile 630])
TGATGT
>X5141|ORF|3976366..3976932|2|(gi|260681769|ref|NC_013315.1|)
CAATTT
>5033|ORF|3845223..3845762|2|(gi|260681769|ref|NC_013315.1|)
ATATTG
>X4715|ORF|3359727..3360245|2|(gi|260681769|ref|NC_013315.1|)
AGATAA
>X4404|ORF|2885649..2886368|2|(gi|260681769|ref|NC_013315.1|)
AAATTT
>X4299|ORF|2740295..2741242|1|(gi|260681769|ref|NC_013315.1|)
GCTAAT
>3937|ORF|2208374..2208457|1|(gi|260681769|ref|NC_013315.1|)
GACATA
>X3863|ORF|2081573..2082778|1|(gi|260681769|ref|NC_013315.1|)
ATTATA
>3859|ORF|2077893..2078417|1|(gi|260681769|ref|NC_013315.1|)
GAAAAA
>X3748|ORF|1768199..1769065|2|(gi|260681769|ref|NC_013315.1|)
ACTGAA
>3724|ORF|1710778..1711647|1|(gi|260681769|ref|NC_013315.1|)
AAGATT
>3702|ORF|1676840..1677343|2|(gi|260681769|ref|NC_013315.1|)
GGATAT
>3701|ORF|1675351..1676217|2|(gi|260681769|ref|NC_013315.1|)
ATAATT
>X3436|ORF|1024008..1025378|1|(gi|260681769|ref|NC_013315.1|)
AAAAGA
>X3256|ORF|526329..527726|1|(gi|260681769|ref|NC_013315.1|)
ATTTGA
>2927|CDS|3905132..3905650|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701137|ref|YP_001090034.1| pilin [Clostridium difficile 630])
GGACTC
>2824|CDS|3768584..3769078|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126701028|ref|YP_001089925.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile 630])
AGAATT
>2808|CDS|3744736..3745689|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700985|ref|YP_001089882.1| putative signaling protein [Clostridium difficile 630])
ACTTTA
>2800|CDS|3733798..3734313|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700975|ref|YP_001089872.1| putative nitroreductase [Clostridium difficile 630])
TTATGA
>2721|CDS|3628882..3629643|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700867|ref|YP_001089764.1| polysaccharide deacetylase [Clostridium difficile 630])
AAAAAA
>2720|CDS|3627180..3628490|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700866|ref|YP_001089763.1| putative electron transfer protein [Clostridium difficile 630])
TTAAAA
>2674|CDS|3556224..3557342|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700810|ref|YP_001089707.1| putative oxidoreductase [Clostridium difficile 630])
CTTTGA
>2671|CDS|3554555..3555037|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700807|ref|YP_001089704.1| hypothetical protein CD3188 [Clostridium difficile 630])
GAATCT
>2595|CDS|3403480..3404337|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700715|ref|YP_001089612.1| transcription antiterminator [Clostridium difficile 630])
AAATCC
>2512|CDS|3281616..3282389|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700626|ref|YP_001089523.1| IclR family transcriptional regulator [Clostridium difficile 630])
ACATTG
>2464|CDS|3220109..3221479|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700574|ref|YP_001089471.1| V-type ATP synthase subunit B [Clostridium difficile 630])
CCTAAG
>2405|CDS|3136847..3139798|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700447|ref|YP_001089344.1| putative collagen-binding protein [Clostridium difficile 630])
AAAATA
>2382|CDS|3106562..3107068|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700423|ref|YP_001089320.1| crossover junction endodeoxyribonuclease RuvC [Clostridium difficile 630])
AAGTAT
>2372|CDS|3085957..3087555|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700411|ref|YP_001089308.1| cell surface protein [Clostridium difficile 630])
GGCAAT
>2369|CDS|3076780..3078648|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700407|ref|YP_001089304.1| cell surface protein (putative S-layer protein precursor) [Clostridium difficile 630])
ATACTA
>2365|CDS|3071017..3073425|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700403|ref|YP_001089300.1| cell surface protein (putative cell surface-associated cysteine protease) [Clostridium difficile 630])
ACTCTT
>2346|CDS|3044460..3046568|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700383|ref|YP_001089280.1| cell surface protein [Clostridium difficile 630])
TTAAAC
>2291|CDS|2968541..2969386|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700324|ref|YP_001089221.1| hypothetical protein CD2710 [Clostridium difficile 630])
CTCCAA
>2256|CDS|2924251..2925150|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700289|ref|YP_001089186.1| LysR family transcriptional regulator [Clostridium difficile 630])
GTAAAA
>2211|CDS|2860935..2861567|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700238|ref|YP_001089135.1| hypothetical protein CD2624 [Clostridium difficile 630])
TATAAG
>2190|CDS|2831568..2832011|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700217|ref|YP_001089114.1| lipoprotein signal peptidase [Clostridium difficile 630])
AGTAAA
>2159|CDS|2792666..2794591|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700184|ref|YP_001089081.1| putative transcriptional antiterminator [Clostridium difficile 630])
CAAGTC
>1939|CDS|2508179..2508892|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699934|ref|YP_001088831.1| two-component response regulator [Clostridium difficile 630])
AAACTT
>1934|CDS|2503495..2504304|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699929|ref|YP_001088826.1| ABC transporter, substrate-binding protein0 [Clostridium difficile 630])
GAACCT
>1901|CDS|2456736..2458124|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699879|ref|YP_001088776.1| proton-dependent oligopeptide transporter [Clostridium difficile 630])
CAAAAG
>1840|CDS|2381084..2382523|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699809|ref|YP_001088706.1| cell surface protein [Clostridium difficile 630])
TTGAGG
>1813|CDS|2343392..2344357|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699780|ref|YP_001088677.1| L-lactate dehydrogenase [Clostridium difficile 630])
AAAACA
>1780|CDS|2299731..2300654|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699741|ref|YP_001088638.1| putative transporter [Clostridium difficile 630])
TACTCT
>1767|CDS|2279631..2280302|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699727|ref|YP_001088624.1| fructose-6-phosphate aldolase 2 [Clostridium difficile 630])
ACAAAT
>1722|CDS|2218871..2219443|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699680|ref|YP_001088577.1| hypothetical protein CD2063 [Clostridium difficile 630])
TTATTG
>1720|CDS|2216800..2217435|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699678|ref|YP_001088575.1| hypothetical protein CD2061 [Clostridium difficile 630])
GATTTT
>1685|CDS|2174994..2175887|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699635|ref|YP_001088532.1| AraC family transcription regulator [Clostridium difficile 630])
AAAGAA
>1668|CDS|2155035..2155430|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699597|ref|YP_001088494.1| hypothetical protein CD1989 [Clostridium difficile 630])
GAAGAA
>1666|CDS|2151371..2152804|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699595|ref|YP_001088492.1| cell surface protein [Clostridium difficile 630])
GAAAAT
>1639|CDS|2115753..2116814|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699567|ref|YP_001088464.1| putative reductive dehalogenase [Clostridium difficile 630])
ATCTTG
>1591|CDS|2060927..2061106|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699516|ref|YP_001088413.1| hypothetical protein CD1906 [Clostridium difficile 630])
TATAAG
>1404|CDS|1852854..1853813|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699270|ref|YP_001088167.1| cysteine synthase A [Clostridium difficile 630])
ATATGA
>1385|CDS|1822918..1823478|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699248|ref|YP_001088145.1| putative transcriptional regulator [Clostridium difficile 630])
AATGAC
>1353|CDS|1782326..1783504|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699216|ref|YP_001088113.1| putative amidohydrolase [Clostridium difficile 630])
AAAGTT
>1187|CDS|1512384..1512557|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699029|ref|YP_001087926.1| hypothetical protein CD1424 [Clostridium difficile 630])
AGTATA
>1166|CDS|1481163..1483349|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699005|ref|YP_001087902.1| putative nonribosomal peptide synthetase [Clostridium difficile 630])
CACTAC
>1101|CDS|1413017..1414210|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698938|ref|YP_001087835.1| aspartate aminotransferase [Clostridium difficile 630])
AGCTTT
>1024|CDS|1321814..1323103|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698856|ref|YP_001087753.1| branched-chain amino acid transport system carrier protein [Clostridium difficile 630])
CTTGGA
>999|CDS|1289509..1290327|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698828|ref|YP_001087725.1| putative lipoprotein [Clostridium difficile 630])
ATTAAA
>890|CDS|1159169..1160353|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698672|ref|YP_001087569.1| hypothetical protein CD1085 [Clostridium difficile 630])
GTAAAT
>874|CDS|1140023..1140925|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698653|ref|YP_001087550.1| hypothetical protein CD1066 [Clostridium difficile 630])
TAAGAA
>805|CDS|1034481..1035554|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698578|ref|YP_001087475.1| putative aminotransferase [Clostridium difficile 630])
GGTTTT
>704|CDS|935825..937015|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698412|ref|YP_001087309.1| trans-homoaconitate synthase [Clostridium difficile 630])
GGTTCA
>635|CDS|852661..854328|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698337|ref|YP_001087234.1| putative signaling protein [Clostridium difficile 630])
TTTCAA
>619|CDS|830167..831690|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698321|ref|YP_001087218.1| glycerol kinase [Clostridium difficile 630])
TGTGTG
>568|CDS|760350..762272|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698268|ref|YP_001087165.1| putative nucleotide phosphodiesterase [Clostridium difficile 630])
ACAATT
>567|CDS|759369..759911|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698267|ref|YP_001087164.1| hypothetical protein CD0688 [Clostridium difficile 630])
GGATGA
>379|CDS|475773..476132|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698025|ref|YP_001086922.1| hypothetical protein CD0451 [Clostridium difficile 630])
CATACA
>126|CDS|172495..173685|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697702|ref|YP_001086599.1| S-adenosylmethionine synthetase [Clostridium difficile 630])
TGCTTT
>118|CDS|165532..166266|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697694|ref|YP_001086591.1| hypothetical protein CD0122 [Clostridium difficile 630])
ATTAGA
>X5094|ORF|3917902..3918429|2|(gi|260681769|ref|NC_013315.1|)
AAACAA
>X5037|ORF|3850764..3851177|2|(gi|260681769|ref|NC_013315.1|)
GAAATA
>5022|ORF|3833375..3834103|2|(gi|260681769|ref|NC_013315.1|)
ATTCTA
>X4783|ORF|3469698..3470222|2|(gi|260681769|ref|NC_013315.1|)
GCGATT
>X4675|ORF|3302278..3303675|2|(gi|260681769|ref|NC_013315.1|)
GAGAAA
>X4368|ORF|2836158..2837357|2|(gi|260681769|ref|NC_013315.1|)
GTAAAG
>X4283|ORF|2714137..2715513|2|(gi|260681769|ref|NC_013315.1|)
ATTTAA
>X4116|ORF|2461981..2463504|2|(gi|260681769|ref|NC_013315.1|)
AGTTAT
>X3912|ORF|2164151..2165803|2|(gi|260681769|ref|NC_013315.1|)
AAGTAT
>3844|ORF|2043569..2048083|1|(gi|260681769|ref|NC_013315.1|)
TGTTGA
>X3261|ORF|548398..549501|2|(gi|260681769|ref|NC_013315.1|)
ATTAAA
>2990|CDS|3974656..3975807|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701204|ref|YP_001090101.1| methionine gamma-lyase [Clostridium difficile 630])
AAAAAA
>2873|CDS|3850013..3850579|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126701079|ref|YP_001089976.1| putative 5-formyltetrahydrofolate cyclo-ligase [Clostridium difficile 630])
CTCCAA
>2865|CDS|3822598..3824496|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701070|ref|YP_001089967.1| putative transcription antiterminator [Clostridium difficile 630])
CTATCT
>2857|CDS|3814254..3815297|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701062|ref|YP_001089959.1| nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [Clostridium difficile 630])
TGACAT
>2836|CDS|3787364..3788431|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701040|ref|YP_001089937.1| ABC transporter, ATP-binding protein [Clostridium difficile 630])
ATGAAA
>2734|CDS|3645904..3646818|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700882|ref|YP_001089779.1| putative phosphate ABC transporter, permease protein [Clostridium difficile 630])
AATAAG
>2628|CDS|3465236..3466111|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700753|ref|YP_001089650.1| hypothetical protein CD3135 [Clostridium difficile 630])
ATAAAA
>2602|CDS|3412559..3413707|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700722|ref|YP_001089619.1| alcohol dehydrogenase [Clostridium difficile 630])
TAGAAA
>2417|CDS|3158403..3159398|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700459|ref|YP_001089356.1| putative zinc-binding dehydrogenase [Clostridium difficile 630])
ATTTAG
>2406|CDS|3140125..3141300|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700448|ref|YP_001089345.1| putative cation efflux protein [Clostridium difficile 630])
AAGGAT
>2374|CDS|3090015..3095975|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700413|ref|YP_001089310.1| hypothetical protein CD2797 [Clostridium difficile 630])
AGAGAT
>2343|CDS|3040900..3041685|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700380|ref|YP_001089277.1| putative hydrolase [Clostridium difficile 630])
TCATAA
>2320|CDS|3009232..3010461|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700353|ref|YP_001089250.1| putative cytosine permease [Clostridium difficile 630])
AATCAA
>2272|CDS|2943405..2943929|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700305|ref|YP_001089202.1| putative phosphoribosyltransferase [Clostridium difficile 630])
TGAGGA
>2247|CDS|2911618..2913069|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700278|ref|YP_001089175.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelat e ligase [Clostridium difficile 630])
TAAGTA
>2028|CDS|2626657..2627199|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700033|ref|YP_001088930.1| PTS system, glucitol/sorbitol-specific IIc2 component [Clostridium difficile 630])
AAATAA
>2004|CDS|2593722..2594093|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700005|ref|YP_001088902.1| putative beta-lactamase repressor [Clostridium difficile 630])
TTAAAG
>1849|CDS|2391317..2392744|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699818|ref|YP_001088715.1| lactose permease [Clostridium difficile 630])
TCAAAG
>1580|CDS|2051348..2051836|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699503|ref|YP_001088400.1| putative regulatory protein [Clostridium difficile 630])
TACTAC
>1532|CDS|1992300..1993187|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699411|ref|YP_001088308.1| putative hydrolase [Clostridium difficile 630])
GATAAA
>1517|CDS|1976303..1977499|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699394|ref|YP_001088291.1| argininosuccinate synthase [Clostridium difficile 630])
AAAGCT
>1465|CDS|1914499..1916115|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699335|ref|YP_001088232.1| putative sodium/phosphate cotransporter [Clostridium difficile 630])
TAAACA
>1396|CDS|1838899..1841370|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699261|ref|YP_001088158.1| putative bi-functional glycine dehydrogenase/aminomethyl transferase protein [Clostridium difficile 630])
AATGGA
>1357|CDS|1788356..1789897|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699220|ref|YP_001088117.1| putative signaling protein [Clostridium difficile 630])
TTGGTA
>1318|CDS|1738313..1739524|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699176|ref|YP_001088073.1| putative transcriptional regulator [Clostridium difficile 630])
TTGAAA
>1264|CDS|1607104..1608015|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699115|ref|YP_001088012.1| hypothetical protein CD1511 [Clostridium difficile 630])
AGTTAT
>1234|CDS|1573645..1573863|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699082|ref|YP_001087979.1| putative ferrous iron transport protein A [Clostridium difficile 630])
AATTAT
>1005|CDS|2589917..2590291|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698835|ref|YP_001087732.1| putative regulatory protein [Clostridium difficile 630])
AATTTA
>902|CDS|1173943..1174809|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698718|ref|YP_001087615.1| nitroreductase-family protein [Clostridium difficile 630])
TATTGT
>875|CDS|1141406..1142620|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698654|ref|YP_001087551.1| hypothetical protein CD1067 [Clostridium difficile 630])
TTGCCA
>702|CDS|932692..933873|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698410|ref|YP_001087307.1| hypothetical protein CD0830 [Clostridium difficile 630])
GAAAAT
>697|CDS|928030..928563|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698405|ref|YP_001087302.1| rubrerythrin [Clostridium difficile 630])
GCTGAA
>593|CDS|800818..801726|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698295|ref|YP_001087192.1| putative phosphate butyryltransferase [Clostridium difficile 630])
AAAAAT
>576|CDS|773383..774051|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698276|ref|YP_001087173.1| putative cation transport protein [Clostridium difficile 630])
TAGAAG
>512|CDS|671047..671274|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698205|ref|YP_001087102.1| putative ferredoxin [Clostridium difficile 630])
GGTAAG
>433|CDS|554200..555048|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698109|ref|YP_001087006.1| hypothetical protein CD0530 [Clostridium difficile 630])
ACAGAA
>389|CDS|490337..490867|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698039|ref|YP_001086936.1| TetR family transcriptional regulator [Clostridium difficile 630])
AAAGCA
>346|CDS|439275..439799|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126697962|ref|YP_001086859.1| hypothetical protein CD0393 [Clostridium difficile 630])
ACGTTA
>311|CDS|414537..415469|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697910|ref|YP_001086807.1| two-component sensor histidine kinase [Clostridium difficile 630])
TACCAA
>263|CDS|344306..346870|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697855|ref|YP_001086752.1| putative transcription antiterminator [Clostridium difficile 630])
ATAAAT
>30|CDS|52607..53770|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697598|ref|YP_001086495.1| putative beta-glucosidase [Clostridium difficile 630])
TCCTAT
>X5169|ORF|4018700..4021363|1|(gi|260681769|ref|NC_013315.1|)
AAATCA
>X5032|ORF|3844529..3845227|2|(gi|260681769|ref|NC_013315.1|)
ATAAAA
>5025|ORF|3837502..3838080|1|(gi|260681769|ref|NC_013315.1|)
AATAAC
>X4762|ORF|3435586..3437196|2|(gi|260681769|ref|NC_013315.1|)
GTAGAC
>X4719|ORF|3368198..3369379|2|(gi|260681769|ref|NC_013315.1|)
AACTGA
>X4717|ORF|3363641..3366973|2|(gi|260681769|ref|NC_013315.1|)
GATAGG
>X4677|ORF|3305419..3306090|2|(gi|260681769|ref|NC_013315.1|)
TCAAAA
>X4672|ORF|3298243..3299172|2|(gi|260681769|ref|NC_013315.1|)
AAGCTA
>X4595|ORF|3195867..3196802|1|(gi|260681769|ref|NC_013315.1|)
TTAATA
>X4170|ORF|2556412..2558103|2|(gi|260681769|ref|NC_013315.1|)
GACAGC
>X4108|ORF|2451568..2452599|2|(gi|260681769|ref|NC_013315.1|)
ATTTTC
>X3880|ORF|2104447..2105847|2|(gi|260681769|ref|NC_013315.1|)
CTTTCC
>X3734|ORF|1734087..1734650|2|(gi|260681769|ref|NC_013315.1|)
TAAAAA
>X3673|ORF|1610307..1611131|2|(gi|260681769|ref|NC_013315.1|)
ATTATA
>X3533|ORF|1292926..1293822|1|(gi|260681769|ref|NC_013315.1|)
TAGCAT
>X3188|ORF|359615..360631|1|(gi|260681769|ref|NC_013315.1|)
GTGAAT
>X3155|ORF|253908..254330|1|(gi|260681769|ref|NC_013315.1|)
CTTATT
>2882|CDS|3857789..3858166|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701089|ref|YP_001089986.1| 4'-phosphopantetheinyl transferase [Clostridium difficile 630])
AACCAT
>2798|CDS|3731424..3732836|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700973|ref|YP_001089870.1| GntR family transcriptional regulator [Clostridium difficile 630])
GAATCA
>2788|CDS|3714896..3715552|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700939|ref|YP_001089836.1| two-component response regulator [Clostridium difficile 630])
GTATAA
>2742|CDS|3660091..3660597|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700891|ref|YP_001089788.1| hypothetical protein CD3272 [Clostridium difficile 630])
TAAGTT
>2727|CDS|3635751..3636458|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700874|ref|YP_001089771.1| two-component response regulator [Clostridium difficile 630])
TGATAT
>2711|CDS|3616031..3616663|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700855|ref|YP_001089752.1| single-strand DNA-binding protein [Clostridium difficile 630])
AATAAC
>2708|CDS|3610692..3611228|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700851|ref|YP_001089748.1| hypoxanthine phosphoribosyltransferase [Clostridium difficile 630])
TGATGA
>2675|CDS|3565189..3566112|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700812|ref|YP_001089709.1| putative phage-related protein [Clostridium difficile 630])
AAGATA
>2606|CDS|3417169..3417882|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700726|ref|YP_001089623.1| putative pentose-5-phosphate 3-epimerase [Clostridium difficile 630])
TTGGTT
>2556|CDS|3340884..3341633|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700673|ref|YP_001089570.1| ABC transporter, ATP-binding protein [Clostridium difficile 630])
GGAGGT
>2342|CDS|3040304..3040771|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700379|ref|YP_001089276.1| putative lipoprotein [Clostridium difficile 630])
ATATCA
>2339|CDS|3034540..3036270|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700374|ref|YP_001089271.1| putative DNA modification methylase [Clostridium difficile 630])
CTTTAG
>2335|CDS|3029120..3029782|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700368|ref|YP_001089265.1| hypothetical protein CD2752 [Clostridium difficile 630])
AAATCT
>2309|CDS|2997526..2998311|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700342|ref|YP_001089239.1| hypothetical protein CD2727 [Clostridium difficile 630])
AGGAGG
>2110|CDS|2726496..2727140|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700120|ref|YP_001089017.1| putative D-alanyl-D-alanine carboxypeptidase [Clostridium difficile 630])
TTACAT
>2105|CDS|2717489..2718775|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700114|ref|YP_001089011.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein) [Clostridium difficile 630])
AAAATA
>2080|CDS|2686152..2687102|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700087|ref|YP_001088984.1| germination protease [Clostridium difficile 630])
CCAGGT
>1969|CDS|2546237..2547313|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699965|ref|YP_001088862.1| putative Xaa-Pro dipeptidase [Clostridium difficile 630])
GATTTT
>1929|CDS|2497692..2498183|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699922|ref|YP_001088819.1| putative pilin protein [Clostridium difficile 630])
AAATCG
>1862|CDS|2408900..2409235|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699831|ref|YP_001088728.1| putative regulatory protein [Clostridium difficile 630])
TACAAA
>1774|CDS|2291887..2293365|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699735|ref|YP_001088632.1| threonine synthase [Clostridium difficile 630])
CTTAAA
>1765|CDS|2276688..2278031|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699725|ref|YP_001088622.1| putative drug/sodium antiporter [Clostridium difficile 630])
ATAGAA
>1742|CDS|2246676..2247887|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699702|ref|YP_001088599.1| diaminopropionate ammonia-lyase [Clostridium difficile 630])
TATCCA
>1702|CDS|2471268..2472326|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699652|ref|YP_001088549.1| hypothetical protein CD2035 [Clostridium difficile 630])
CTGCAT
>1701|CDS|2192163..2193194|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699651|ref|YP_001088548.1| N-acetyl-gamma-glutamyl-phosphate reductase [Clostridium difficile 630])
TGCACC
>1683|CDS|2173015..2173269|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699633|ref|YP_001088530.1| hypothetical protein CD2016 [Clostridium difficile 630])
GATGCC
>1613|CDS|2086034..2087188|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699539|ref|YP_001088436.1| hypothetical protein CD1930 [Clostridium difficile 630])
TGTTAT
>1579|CDS|2050469..2051200|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699502|ref|YP_001088399.1| hypothetical protein CD1892 [Clostridium difficile 630])
TGCAAA
>1537|CDS|1999606..2000205|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699416|ref|YP_001088313.1| putative NADPH-dependent FMN reductase [Clostridium difficile 630])
AGTAGA
>1525|CDS|1985072..1985314|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699403|ref|YP_001088300.1| hypothetical protein CD1794 [Clostridium difficile 630])
GGTTAA
>1501|CDS|1956594..1960844|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699378|ref|YP_001088275.1| hypothetical protein CD1769 [Clostridium difficile 630])
CTTTTA
>1499|CDS|1953633..1954646|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699376|ref|YP_001088273.1| glyceraldehyde-3-phosphate dehydrogenase 1 [Clostridium difficile 630])
ATTAAA
>1495|CDS|1950327..1950590|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699372|ref|YP_001088269.1| hypothetical protein CD1763 [Clostridium difficile 630])
TTATAT
>1485|CDS|1940508..1941095|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699359|ref|YP_001088256.1| TetR family transcriptional regulator [Clostridium difficile 630])
TACAAC
>1467|CDS|1918449..1919597|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699338|ref|YP_001088235.1| putative acetyltransferase [Clostridium difficile 630])
TTTAAA
>1455|CDS|1904530..1905822|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699323|ref|YP_001088220.1| permease [Clostridium difficile 630])
AGAAAT
>1434|CDS|1880536..1881798|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699301|ref|YP_001088198.1| putative arsenical pump membrane protein [Clostridium difficile 630])
TATAAA
>1413|CDS|1864822..1865439|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699279|ref|YP_001088176.1| putative NADPH-dependent FMN reductase [Clostridium difficile 630])
ATTTTA
>1406|CDS|1856277..1856858|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699272|ref|YP_001088169.1| sugar O-acetyltransferase [Clostridium difficile 630])
GAGAAA
>1399|CDS|1845699..1846013|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699264|ref|YP_001088161.1| hypothetical protein CD1660 [Clostridium difficile 630])
ATATAG
>1394|CDS|1834301..1835284|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699258|ref|YP_001088155.1| putative lipoate-protein ligase [Clostridium difficile 630])
AGGTGT
>1305|CDS|1663588..1664418|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699160|ref|YP_001088057.1| putative polysaccharide deacetylase [Clostridium difficile 630])
ACGTAA
>1294|CDS|1652448..1653011|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699149|ref|YP_001088046.1| hypothetical protein CD1545 [Clostridium difficile 630])
ACATAA
>1271|CDS|1619491..1619715|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699122|ref|YP_001088019.1| putative ferrous ion transport protein [Clostridium difficile 630])
AGTTTC
>1268|CDS|1612685..1614775|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699119|ref|YP_001088016.1| putative signaling protein [Clostridium difficile 630])
GCTAGA
>1228|CDS|1563856..1564152|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699074|ref|YP_001087971.1| putative phage shock protein [Clostridium difficile 630])
ATATGA
>1220|CDS|1552389..1552775|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699066|ref|YP_001087963.1| GntR family transcriptional regulator [Clostridium difficile 630])
TGAAAT
>1184|CDS|1507999..1510230|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699026|ref|YP_001087923.1| putative signaling protein [Clostridium difficile 630])
ATTTAA
>1155|CDS|1470756..1471097|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698994|ref|YP_001087891.1| putative endoribonuclease [Clostridium difficile 630])
AGCTAC
>1122|CDS|1434108..1434302|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698960|ref|YP_001087857.1| putative phage regulatory protein [Clostridium difficile 630])
TTATAC
>1115|CDS|1427978..1428796|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698952|ref|YP_001087849.1| putative pyridoxine kinase [Clostridium difficile 630])
TTTAAC
>1098|CDS|1408935..1410509|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698935|ref|YP_001087832.1| PTS system, maltose and glucose-specific IIBC component [Clostridium difficile 630])
TGCAAT
>1067|CDS|1369104..1369838|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698901|ref|YP_001087798.1| NAD-dependent deacetylase [Clostridium difficile 630])
ATTAAG
>1026|CDS|1326083..1328269|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698858|ref|YP_001087755.1| putative ribonucleotide-diphosphate reductase [Clostridium difficile 630])
TAGTGG
>1007|CDS|1303942..1304133|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698837|ref|YP_001087734.1| putative phage-related DNA-directed RNA polymerase 7 kDa polypeptide [Clostridium difficile 630])
CAATAA
>984|CDS|1271979..1273097|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698811|ref|YP_001087708.1| putative pyrophosphokinase [Clostridium difficile 630])
ATTATT
>931|CDS|1215292..1217133|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698753|ref|YP_001087650.1| radical SAM-superfamily protein [Clostridium difficile 630])
GGGCTT
>835|CDS|1080877..1081722|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698612|ref|YP_001087509.1| putative signaling protein [Clostridium difficile 630])
TGTT
>791|CDS|1725323..1725577|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698555|ref|YP_001087452.1| putative phage membrane protein [Clostridium difficile 630]#gi|126700511|ref|YP_001089408.1| phage holin [Clostridium difficile 630])
TGGTGA
>736|CDS|972430..973356|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698445|ref|YP_001087342.1| hypothetical protein CD0868 [Clostridium difficile 630])
CTATAG
>691|CDS|918280..920154|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698396|ref|YP_001087293.1| PTS system, IIABC component [Clostridium difficile 630])
ATTAGC
>574|CDS|769528..771267|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698274|ref|YP_001087171.1| putative exported peptidase [Clostridium difficile 630])
TAAAAA
>573|CDS|768589..769167|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698273|ref|YP_001087170.1| TetR family transcriptional regulator [Clostridium difficile 630])
ATGTTG
>565|CDS|757916..758422|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698264|ref|YP_001087161.1| translation initiation factor IF-3 [Clostridium difficile 630])
ATCCAA
>533|CDS|700407..700778|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698230|ref|YP_001087127.1| GntR family transcriptional regulator [Clostridium difficile 630])
ATGAGG
>486|CDS|637191..637628|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698171|ref|YP_001087068.1| hypothetical protein CD0593 [Clostridium difficile 630])
CTAAAC
>436|CDS|558300..558659|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698112|ref|YP_001087009.1| chemotaxis protein [Clostridium difficile 630])
TGTTTT
>414|CDS|520480..521163|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698066|ref|YP_001086963.1| putative phosphoribosylaminoimidazole-succinocarboxamide synthase [Clostridium difficile 630])
CTGCTC
>378|CDS|475011..475472|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698024|ref|YP_001086921.1| hypothetical protein CD0450 [Clostridium difficile 630])
TGTTAC
>315|CDS|422125..422373|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126697914|ref|YP_001086811.1| hypothetical protein CD0342 [Clostridium difficile 630])
TAAATA
>289|CDS|377953..378315|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697884|ref|YP_001086781.1| transcription regulator ArsR [Clostridium difficile 630])
AGAAAC
>196|CDS|264904..267135|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697775|ref|YP_001086672.1| putative signaling protein [Clostridium difficile 630])
AAAATA
>162|CDS|217307..218524|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126697738|ref|YP_001086635.1| putative amidohydrolase/peptidase [Clostridium difficile 630])
TTTGTA
>127|CDS|174004..175098|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697703|ref|YP_001086600.1| hypothetical protein CD0131 [Clostridium difficile 630])
CTGAAA
>33|CDS|57356..58306|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697601|ref|YP_001086498.1| transcriptional regulator [Clostridium difficile 630])
AGAAGA
>X5173|ORF|4026216..4027418|1|(gi|260681769|ref|NC_013315.1|)
AAAAGG
>X5021|ORF|3832297..3833130|2|(gi|260681769|ref|NC_013315.1|)
CAAAAG
>X4798|ORF|3496560..3497321|2|(gi|260681769|ref|NC_013315.1|)
TAGGAG
>X4421|ORF|2911615..2913066|2|(gi|260681769|ref|NC_013315.1|)
AAATGT
>X4313|ORF|2763736..2765067|2|(gi|260681769|ref|NC_013315.1|)
TGTGTC
>X4129|ORF|2483525..2486425|2|(gi|260681769|ref|NC_013315.1|)
AAACAT
>X4017|ORF|2319833..2320474|2|(gi|260681769|ref|NC_013315.1|)
TGATAA
>X3930|ORF|2195793..2196347|2|(gi|260681769|ref|NC_013315.1|)
AAAAAA
>X3927|ORF|2192160..2193191|2|(gi|260681769|ref|NC_013315.1|)
CCATCA
>X3858|ORF|2076904..2077380|1|(gi|260681769|ref|NC_013315.1|)
CTCAAA
>X3718|ORF|1697530..1698966|1|(gi|260681769|ref|NC_013315.1|)
GAAACA
>3705|ORF|1682762..1682839|2|(gi|260681769|ref|NC_013315.1|)
TTTTTT
>X3506|ORF|1202846..1203250|1|(gi|260681769|ref|NC_013315.1|)
ATAGGA
>X3343|ORF|745537..747180|1|(gi|260681769|ref|NC_013315.1|)
TAGCAA
>3073|CDS|4098907..4099479|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126701297|ref|YP_001090194.1| hypothetical protein CD3669 [Clostridium difficile 630])
AGATTA
>3029|CDS|4052552..4053415|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701247|ref|YP_001090144.1| hypothetical protein CD3621 [Clostridium difficile 630])
AATACT
>3011|CDS|4006081..4006794|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701228|ref|YP_001090125.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile 630])
ACAAAA
>3002|CDS|3995580..3996293|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701219|ref|YP_001090116.1| orotidine 5'-phosphate decarboxylase [Clostridium difficile 630])
AATAGA
>2953|CDS|3935582..3937009|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126701167|ref|YP_001090064.1| putative nicotinate phosphribosyltransferase [Clostridium difficile 630])
CTAAAA
>2869|CDS|3828402..3829328|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701074|ref|YP_001089971.1| putative tagatose-6-phosphate kinase [Clostridium difficile 630])
AAAAAA
>2868|CDS|3827353..3828267|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126701073|ref|YP_001089970.1| putative oxidoreductase [Clostridium difficile 630])
AAATTC
>2867|CDS|3825725..3826891|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701072|ref|YP_001089969.1| putative tagatose-6-phosphate ketose/aldose isomerase [Clostridium difficile 630])
GTGTAA
>2858|CDS|3816102..3816971|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126701063|ref|YP_001089960.1| putative aldose epimerase [Clostridium difficile 630])
ATATAA
>2781|CDS|3706277..3707557|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700931|ref|YP_001089828.1| transporter [Clostridium difficile 630])
ATAAAC
>2751|CDS|3670278..3671078|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700900|ref|YP_001089797.1| pyrroline-5-carboxylate reductase [Clostridium difficile 630])
AAGATA
>2716|CDS|3620344..3621108|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700860|ref|YP_001089757.1| hypothetical protein CD3240 [Clostridium difficile 630])
CT
>2701|CDS|3600566..3601444|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700843|ref|YP_001089740.1| dihydrodipicolinate synthase [Clostridium difficile 630])
GATTTA
>2695|CDS|3594269..3595066|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700837|ref|YP_001089734.1| hypothetical protein CD3218 [Clostridium difficile 630])
AGTGAA
>2693|CDS|3589553..3591085|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700835|ref|YP_001089732.1| putative osmoprotectant ABC transporter,substrate-binding/permease protein [Clostridium difficile 630])
GAAAGG
>2683|CDS|3579158..3579805|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700823|ref|YP_001089720.1| hypothetical protein CD3204 [Clostridium difficile 630])
AATAGT
>2603|CDS|3413977..3414615|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700723|ref|YP_001089620.1| putative phopho-sugar aldolase [Clostridium difficile 630])
AAGGTT
>2571|CDS|3359730..3360248|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700689|ref|YP_001089586.1| hypothetical protein CD3072 [Clostridium difficile 630])
CTTAGA
>2545|CDS|3327262..3328290|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700661|ref|YP_001089558.1| hypothetical protein CD3043 [Clostridium difficile 630])
TTCGAT
>2517|CDS|3289022..3289354|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700631|ref|YP_001089528.1| putative transcriptional regulator [Clostridium difficile 630])
AATTGT
>2513|CDS|3282725..3283867|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700627|ref|YP_001089524.1| alcohol dehydrogenase [Clostridium difficile 630])
ATGAAA
>2449|CDS|3205303..3206238|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700494|ref|YP_001089391.1| putative ferrichrome ABC transporter,substrate-binding protein [Clostridium difficile 630])
TGAATT
>2415|CDS|3155367..3156968|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700457|ref|YP_001089354.1| putative amidohydrolase [Clostridium difficile 630])
TTGTAT
>2313|CDS|2999673..3000071|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700346|ref|YP_001089243.1| hypothetical protein CD2731 [Clostridium difficile 630])
ACAAGT
>2281|CDS|2952830..2954851|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700314|ref|YP_001089211.1| putative sigma54-interacting regulatory protein [Clostridium difficile 630])
AAAATA
>2252|CDS|2919401..2920375|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700285|ref|YP_001089182.1| oligopeptide transporter, ATP-binding protein [Clostridium difficile 630])
AAAAAG
>2165|CDS|2802189..2802902|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700190|ref|YP_001089087.1| two-component response regulator [Clostridium difficile 630])
AAAATT
>2125|CDS|2746720..2747406|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700141|ref|YP_001089038.1| nicotinate-nucleotide adenylyltransferase [Clostridium difficile 630])
AATATG
>2067|CDS|2667883..2668989|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700073|ref|YP_001088970.1| ABC transporter, ATP-binding protein [Clostridium difficile 630])
ACTTTA
>2014|CDS|2605312..2605740|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700018|ref|YP_001088915.1| deoxyuridine 5'-triphosphate nucleotidohydrolase [Clostridium difficile 630])
GCTCAA
>2002|CDS|2587128..2588147|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700002|ref|YP_001088899.1| dehydrogenase [Clostridium difficile 630])
TGGAAT
>1938|CDS|2506838..2507635|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699933|ref|YP_001088830.1| hypothetical protein CD2315 [Clostridium difficile 630])
TACACC
>1867|CDS|2412305..2412934|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699843|ref|YP_001088740.1| streptogramin A acetyltransferase [Clostridium difficile 630])
ATAAAT
>1857|CDS|2400749..2402023|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699826|ref|YP_001088723.1| putative GTP-binding protein [Clostridium difficile 630])
AAAAAG
>1850|CDS|2393402..2394763|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699819|ref|YP_001088716.1| putative sodium/solute symporter [Clostridium difficile 630])
TTCAAA
>1841|CDS|2383196..2384407|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699810|ref|YP_001088707.1| putative regulator of a specific sugar metabolism [Clostridium difficile 630])
GTAGTA
>1826|CDS|2357964..2358764|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699793|ref|YP_001088690.1| amino-acid ABC transporter,substrate-binding protein [Clostridium difficile 630])
CTATTA
>1786|CDS|2308926..2309504|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699749|ref|YP_001088646.1| hypothetical protein CD2133 [Clostridium difficile 630])
CAAAAA
>1717|CDS|2213098..2213808|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699675|ref|YP_001088572.1| hypothetical protein CD2058 [Clostridium difficile 630])
AAAACA
>1708|CDS|2201703..2202572|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699665|ref|YP_001088562.1| transcriptional regulator [Clostridium difficile 630])
TATTCT
>1705|CDS|2198328..2198792|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699661|ref|YP_001088558.1| hypothetical protein CD2044 [Clostridium difficile 630])
ATTTAA
>1693|CDS|2184033..2184443|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699643|ref|YP_001088540.1| putative acetyltransferase [Clostridium difficile 630])
AAAAAT
>1689|CDS|2180900..2181301|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699639|ref|YP_001088536.1| hypothetical protein CD2022 [Clostridium difficile 630])
A
>1646|CDS|2125212..2126507|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699575|ref|YP_001088472.1| putative acyl-CoA thioesterase [Clostridium difficile 630])
GATTTA
>1638|CDS|2114823..2115491|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699566|ref|YP_001088463.1| two-component response regulator [Clostridium difficile 630])
GGAATG
>1551|CDS|2013993..2014454|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699430|ref|YP_001088327.1| putative thiol peroxidase (bacterioferritin comigratory protein) [Clostridium difficile 630])
GGAAAA
>1530|CDS|1990273..1990836|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699409|ref|YP_001088306.1| tellurium resistance protein [Clostridium difficile 630])
TAATAC
>1510|CDS|1968293..1968991|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699387|ref|YP_001088284.1| hypothetical protein CD1778 [Clostridium difficile 630])
CTTTTT
>1498|CDS|1952532..1952993|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699375|ref|YP_001088272.1| putative lipoprotein [Clostridium difficile 630])
AAACCC
>1493|CDS|1947927..1948685|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699369|ref|YP_001088266.1| putative iron-sulfur protein [Clostridium difficile 630])
TTAAAA
>1462|CDS|1912201..1912479|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699332|ref|YP_001088229.1| hypothetical protein CD1726 [Clostridium difficile 630])
TGTACA
>1460|CDS|1909727..1910488|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699329|ref|YP_001088226.1| acyltransferase [Clostridium difficile 630])
ATTTAA
>1440|CDS|1887967..1890447|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699307|ref|YP_001088204.1| ATP-dependent DNA helicase [Clostridium difficile 630])
TATTAT
>1414|CDS|1865705..1866034|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699280|ref|YP_001088177.1| putative transcriptional regulator [Clostridium difficile 630])
GGAATA
>1402|CDS|1847748..1849016|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699268|ref|YP_001088165.1| guanine deaminase [Clostridium difficile 630])
GAAGAA
>1395|CDS|1835768..1837495|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699259|ref|YP_001088156.1| putative Na+/H+ antiporter [Clostridium difficile 630])
CTTGTA
>1374|CDS|1809276..1810709|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699237|ref|YP_001088134.1| putative serine protease [Clostridium difficile 630])
TTGAGA
>1365|CDS|1798528..1799226|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699228|ref|YP_001088125.1| two-component response regulator [Clostridium difficile 630])
GAAAAG
>1320|CDS|1740824..1741618|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699178|ref|YP_001088075.1| hypothetical protein CD1575 [Clostridium difficile 630])
GATATA
>1251|CDS|1595256..1595729|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699101|ref|YP_001087998.1| hypothetical protein CD1497 [Clostridium difficile 630])
TCATCA
>1221|CDS|1552967..1553410|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699067|ref|YP_001087964.1| hypothetical protein CD1463 [Clostridium difficile 630])
AATATG
>1146|CDS|1458479..1459996|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698985|ref|YP_001087882.1| glycerol kinase [Clostridium difficile 630])
GAAGAT
>1104|CDS|1416553..1417326|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698941|ref|YP_001087838.1| putative exonuclease [Clostridium difficile 630])
AGAAAA
>1065|CDS|1367412..1368077|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698898|ref|YP_001087795.1| hypothetical protein CD1301 [Clostridium difficile 630])
AAAAGA
>1058|CDS|1362104..1362697|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698891|ref|YP_001087788.1| putative membrane-associated peptidase [Clostridium difficile 630])
ATTTAT
>1000|CDS|1290518..1291942|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698829|ref|YP_001087726.1| cell surface protein [Clostridium difficile 630])
TGGGAA
>755|CDS|999789..1001261|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698465|ref|YP_001087362.1| arginine decarboxylase [Clostridium difficile 630])
AATAAA
>693|CDS|920469..921872|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698398|ref|YP_001087295.1| putative 6-phospho-beta-glucosidase [Clostridium difficile 630])
TGGAAT
>670|CDS|894732..895484|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698374|ref|YP_001087271.1| NH3-dependent NAD(+) synthetase [Clostridium difficile 630])
CAACCT
>616|CDS|826230..827108|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698318|ref|YP_001087215.1| hypothetical protein CD0738 [Clostridium difficile 630])
TAAACT
>581|CDS|781231..783846|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698282|ref|YP_001087179.1| protease [Clostridium difficile 630])
TATAAA
>572|CDS|767606..768421|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698272|ref|YP_001087169.1| MerR family transcriptional regulator [Clostridium difficile 630])
AGTTAA
>570|CDS|764968..765744|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698270|ref|YP_001087167.1| putative short chain dehydrogenase [Clostridium difficile 630])
AACATA
>541|CDS|710024..717121|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698238|ref|YP_001087135.1| toxin B [Clostridium difficile 630])
AGTGAT
>536|CDS|703255..703986|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698233|ref|YP_001087130.1| metallo-beta-lactamase superfamily protein [Clostridium difficile 630])
ACCTAA
>518|CDS|679684..680049|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698212|ref|YP_001087109.1| hypothetical protein CD0634 [Clostridium difficile 630])
AAAGCC
>517|CDS|678272..679357|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698211|ref|YP_001087108.1| hypothetical protein CD0633 [Clostridium difficile 630])
TTGATT
>473|CDS|610861..612198|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698154|ref|YP_001087051.1| two-component sensor histidine kinase [Clostridium difficile 630])
TAATCA
>461|CDS|586436..587269|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698139|ref|YP_001087036.1| endonuclease IV [Clostridium difficile 630])
ATACTA
>427|CDS|543305..546400|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698103|ref|YP_001087000.1| putative signaling protein [Clostridium difficile 630])
TTTATC
>402|CDS|506562..507071|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698054|ref|YP_001086951.1| hypothetical protein CD0477 [Clostridium difficile 630])
ATAAAT
>398|CDS|502999..503673|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698048|ref|YP_001086945.1| putative iron-sulfur flavoprotein [Clostridium difficile 630])
GCAGGG
>385|CDS|484819..485505|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698035|ref|YP_001086932.1| ABC transporter, ATP-binding protein [Clostridium difficile 630])
AAAAGG
>291|CDS|386451..387056|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697886|ref|YP_001086783.1| hypothetical protein CD0314 [Clostridium difficile 630])
ATAAGA
>205|CDS|274735..275244|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126697788|ref|YP_001086685.1| putative nitroreductase [Clostridium difficile 630])
TATATA
>204|CDS|273975..274187|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126697785|ref|YP_001086682.1| hypothetical protein CD0214 [Clostridium difficile 630])
TTCTGA
>192|CDS|254709..256241|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697769|ref|YP_001086666.1| bifunctional GMP synthase/glutamine amidotransferase protein [Clostridium difficile 630])
GAATGG
>185|CDS|245137..246024|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126697762|ref|YP_001086659.1| LysR family transcriptional regulator [Clostridium difficile 630])
CTTAAA
>178|CDS|237350..238480|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697754|ref|YP_001086651.1| putative membrane-associated metalloprotease [Clostridium difficile 630])
TCTATT
>175|CDS|233949..234773|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697751|ref|YP_001086648.1| putative ATP-binding protein [Clostridium difficile 630])
TAAACT
>170|CDS|227548..228612|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697746|ref|YP_001086643.1| putative lipoprotein [Clostridium difficile 630])
AAGATT
>163|CDS|218896..220905|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126697739|ref|YP_001086636.1| putative sigma-54-dependent transcriptional regulator [Clostridium difficile 630])
AAATAT
>19|CDS|34750..38178|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697587|ref|YP_001086484.1| pyruvate carboxylase [Clostridium difficile 630])
GATAAT
>X5188|ORF|4045816..4046922|2|(gi|260681769|ref|NC_013315.1|)
ATACAA
>4652|ORF|3271459..3271884|1|(gi|260681769|ref|NC_013315.1|)
GAGCTG
>X3493|ORF|1165767..1166459|1|(gi|260681769|ref|NC_013315.1|)
TCAAAT
>X3239|ORF|490334..490864|2|(gi|260681769|ref|NC_013315.1|)
ATTAAA
>X3193|ORF|373834..374328|1|(gi|260681769|ref|NC_013315.1|)
TAAAAA
>2932|CDS|3910902..3912251|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126701142|ref|YP_001090039.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile 630])
GTTGGT
>2630|CDS|3472398..3472811|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700758|ref|YP_001089655.1| hypothetical protein CD3140 [Clostridium difficile 630])
GGGGAT
>2457|CDS|3212206..3213564|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700502|ref|YP_001089399.1| putative drug/sodium antiporter [Clostridium difficile 630])
TGTACA
>2195|CDS|2836161..2837360|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700222|ref|YP_001089119.1| two-component sensor histidine kinase [Clostridium difficile 630])
TATTTT
>1953|CDS|2524254..2524823|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699948|ref|YP_001088845.1| xanthine phosphoribosyltransferase [Clostridium difficile 630])
TGTAAA
>1830|CDS|2366533..2368023|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699799|ref|YP_001088696.1| ATP-dependent RNA helicase [Clostridium difficile 630])
AAAGAG
>1588|CDS|2056592..2057098|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699511|ref|YP_001088408.1| putative phage repressor [Clostridium difficile 630])
GTAAGA
>1145|CDS|1457703..1458242|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698984|ref|YP_001087881.1| TetR family transcriptional regulator [Clostridium difficile 630])
TGAAAA
>1121|CDS|1433622..1433939|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698959|ref|YP_001087856.1| putative phage repressor [Clostridium difficile 630])
ATATAA
>434|CDS|555973..556881|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698110|ref|YP_001087007.1| DeoR family transcriptional regulator [Clostridium difficile 630])
AAATTT
>X5030|ORF|3842896..3843336|2|(gi|260681769|ref|NC_013315.1|)
GAAATA
>X4791|ORF|3485745..3487034|2|(gi|260681769|ref|NC_013315.1|)
GAAATA
>2667|CDS|3547144..3548328|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700803|ref|YP_001089700.1| peptidase [Clostridium difficile 630])
TTTATA
>1189|CDS|1514591..1514953|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699031|ref|YP_001087928.1| putative transcriptional regulator [Clostridium difficile 630])
GCTACA
>1147|CDS|1460116..1460742|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698986|ref|YP_001087883.1| GntR family transcriptional regulator [Clostridium difficile 630])
TGAAAA
>1025|CDS|1324226..1325515|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698857|ref|YP_001087754.1| branched chain amino acid transport system carrier protein [Clostridium difficile 630])
AGTAAA
>939|CDS|1222435..1223637|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698761|ref|YP_001087658.1| homoserine dehydrogenase [Clostridium difficile 630])
TGAAGA
>X5175|ORF|4029022..4029522|1|(gi|260681769|ref|NC_013315.1|)
ACTGCC
>X4965|ORF|3735426..3735878|2|(gi|260681769|ref|NC_013315.1|)
AGATAT
>X3843|ORF|2038012..2038278|1|(gi|260681769|ref|NC_013315.1|)
ATAAAA
>X3723|ORF|1707293..1708123|1|(gi|260681769|ref|NC_013315.1|)
TGGAGT
>3666|ORF|1603237..1603326|1|(gi|260681769|ref|NC_013315.1|)
AACTAT
>X3497|ORF|1180331..1181530|2|(gi|260681769|ref|NC_013315.1|)
GGAATA
>X3417|ORF|978150..978902|2|(gi|260681769|ref|NC_013315.1|)
CAGTTT
>X3326|ORF|684046..684957|1|(gi|260681769|ref|NC_013315.1|)
AAAACT
>X3301|ORF|637188..637625|2|(gi|260681769|ref|NC_013315.1|)
AAAATT
>X3283|ORF|593634..594689|1|(gi|260681769|ref|NC_013315.1|)
ACGAAA
>X3136|ORF|203110..204063|1|(gi|260681769|ref|NC_013315.1|)
TTTAAA
>2962|CDS|3944265..3944453|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701176|ref|YP_001090073.1| hypothetical protein CD3551A [Clostridium difficile 630])
TGATGA
>2799|CDS|3732951..3733616|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700974|ref|YP_001089871.1| hypothetical protein CD3354 [Clostridium difficile 630])
AATTGA
>2792|CDS|3725141..3725416|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700943|ref|YP_001089840.1| hypothetical protein CD3324 [Clostridium difficile 630])
AAAAGA
>2770|CDS|3693318..3695684|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700920|ref|YP_001089817.1| ATP-dependent protease La [Clostridium difficile 630])
TGGTGA
>2659|CDS|3533791..3534810|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700795|ref|YP_001089692.1| central glycolytic genes regulator [Clostridium difficile 630])
ATATTG
>2651|CDS|3523918..3524313|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700787|ref|YP_001089684.1| hypothetical protein CD3168 [Clostridium difficile 630])
TAAACC
>2591|CDS|3397523..3399529|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700711|ref|YP_001089608.1| putative sigma-54-dependent transcriptional regulator [Clostridium difficile 630])
TATTAA
>2536|CDS|3315263..3316012|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700652|ref|YP_001089549.1| putative sugar-specific transcriptional regulator [Clostridium difficile 630])
AAAATG
>2522|CDS|3294446..3296413|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700636|ref|YP_001089533.1| putative transcriptional antiterminator [Clostridium difficile 630])
ATTGGA
>2108|CDS|2722368..2723468|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700118|ref|YP_001089015.1| putative histidinol-phosphate aminotransferase [Clostridium difficile 630])
GATAAT
>2104|CDS|2716708..2717409|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700113|ref|YP_001089010.1| putative competence protein [Clostridium difficile 630])
TTTGTG
>2089|CDS|2695509..2696213|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700096|ref|YP_001088993.1| hypothetical protein CD2479 [Clostridium difficile 630])
CTATTA
>1983|CDS|2564110..2565192|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699982|ref|YP_001088879.1| putative permease [Clostridium difficile 630])
AGGAAA
>1977|CDS|2556415..2558106|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699974|ref|YP_001088871.1| putative oligoendopeptidase [Clostridium difficile 630])
TGACAG
>1958|CDS|2531019..2532515|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699953|ref|YP_001088850.1| inositol-5-monophosphate dehydrogenase [Clostridium difficile 630])
ATAGAA
>1933|CDS|2502660..2502857|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699928|ref|YP_001088825.1| cold shock protein [Clostridium difficile 630])
TATAAC
>1905|CDS|2461984..2463507|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699883|ref|YP_001088780.1| putative oxidoreductase [Clostridium difficile 630])
TCCTAA
>1895|CDS|2446284..2447663|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699871|ref|YP_001088768.1| GntR family transcriptioanl regulator [Clostridium difficile 630])
CACTTC
>1891|CDS|2441635..2442453|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699867|ref|YP_001088764.1| putative ATPase [Clostridium difficile 630])
GCAAAG
>1724|CDS|2220454..2220828|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699682|ref|YP_001088579.1| putative regulatory protein [Clostridium difficile 630])
AAAAGA
>1715|CDS|2210324..2211976|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699673|ref|YP_001088570.1| hypothetical protein CD2056 [Clostridium difficile 630])
AGAAAA
>1684|CDS|2173818..2174186|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699634|ref|YP_001088531.1| putative phage regulatory protein [Clostridium difficile 630])
AAGAAG
>1670|CDS|2157966..2158163|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699599|ref|YP_001088496.1| cold shock protein [Clostridium difficile 630])
TATAAC
>1661|CDS|2142821..2143108|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699590|ref|YP_001088487.1| hypothetical protein CD1980A [Clostridium difficile 630])
TAGAAA
>1634|CDS|2108199..2109083|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699561|ref|YP_001088458.1| LysR family transcriptional regulator [Clostridium difficile 630])
TCTAAT
>1492|CDS|1946048..1946875|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699367|ref|YP_001088264.1| hypothetical protein CD1759 [Clostridium difficile 630])
GTTTTA
>1448|CDS|1897878..1899242|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699315|ref|YP_001088212.1| hypothetical protein CD1708 [Clostridium difficile 630])
AATCTT
>1403|CDS|1852115..1852663|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699269|ref|YP_001088166.1| putative transcriptional regulator [Clostridium difficile 630])
AAATTA
>1398|CDS|1843253..1845607|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699263|ref|YP_001088160.1| cation-transporting ATPase [Clostridium difficile 630])
GTTCCA
>1355|CDS|1784819..1785610|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699218|ref|YP_001088115.1| putative sodium extrusion ABC transporter,ATP-binding protein [Clostridium difficile 630])
GGAGGA
>1292|CDS|1651367..1652017|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699147|ref|YP_001088044.1| putative acyl carrier protein phosphodiesterase [Clostridium difficile 630])
ATGGTA
>1269|CDS|1616391..1617206|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699120|ref|YP_001088017.1| MerR family transcriptional activator [Clostridium difficile 630])
AAGTAT
>1242|CDS|1582041..1582955|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699092|ref|YP_001087989.1| putative transcriptional regulator [Clostridium difficile 630])
TTAAAC
>1173|CDS|1491706..1492959|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699012|ref|YP_001087909.1| competence damage-inducible protein A [Clostridium difficile 630])
TTAGAA
>982|CDS|1269542..1270597|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698809|ref|YP_001087706.1| stage IV sporulation protein B [Clostridium difficile 630])
GATAAA
>946|CDS|1231871..1233148|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698769|ref|YP_001087666.1| hypothetical protein CD1174 [Clostridium difficile 630])
CCAATA
>905|CDS|1184734..1187379|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698722|ref|YP_001087619.1| DNA polymerase I [Clostridium difficile 630])
TATGAG
>825|CDS|1067222..1068946|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698601|ref|YP_001087498.1| putative ABC transporter, permease/ATP-binding protein [Clostridium difficile 630])
GAAGAA
>822|CDS|1061618..1062319|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698597|ref|YP_001087494.1| two-component system response regulator [Clostridium difficile 630])
TGAAGG
>780|CDS|1704827..1705264|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698534|ref|YP_001087431.1| hypothetical protein CD0953 [Clostridium difficile 630]#gi|126700530|ref|YP_001089427.1| phage protein [Clostridium difficile 630])
AGAGGT
>746|CDS|984177..985754|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698456|ref|YP_001087353.1| putative carbohydrate kinase [Clostridium difficile 630])
TTGTTG
>615|CDS|825135..825911|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698317|ref|YP_001087214.1| histidinol-phosphatase [Clostridium difficile 630])
ACGATA
>495|CDS|644926..645336|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698182|ref|YP_001087079.1| hypothetical protein CD0604 [Clostridium difficile 630])
GAAAAA
>470|CDS|599254..600012|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698149|ref|YP_001087046.1| hypothetical protein CD0571 [Clostridium difficile 630])
ACAAGA
>316|CDS|422462..423190|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697915|ref|YP_001086812.1| hypothetical protein CD0343 [Clostridium difficile 630])
AATTGT
>306|CDS|405218..406813|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126697905|ref|YP_001086802.1| putative manganese-dependent inorganic pyrophosphatase [Clostridium difficile 630])
TCAAAA
>261|CDS|342880..343083|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697852|ref|YP_001086749.1| hypothetical protein CD0279A [Clostridium difficile 630])
AATAAA
>259|CDS|341552..341941|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126697850|ref|YP_001086747.1| putative transcriptional regulator [Clostridium difficile 630])
TAGAAA
>X3707|ORF|1683308..1684477|1|(gi|260681769|ref|NC_013315.1|)
AAATAT
>X3408|ORF|960855..961802|1|(gi|260681769|ref|NC_013315.1|)
AGTTGT
>2668|CDS|3548664..3549875|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700804|ref|YP_001089701.1| diaminopropionate ammonia-lyase [Clostridium difficile 630])
CAAAGT
>2586|CDS|3390673..3392124|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700706|ref|YP_001089603.1| PTS system, IIABC component [Clostridium difficile 630])
TGAGAA
>2533|CDS|3311479..3312312|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700649|ref|YP_001089546.1| transcription antiterminator [Clostridium difficile 630])
CAAACA
>2344|CDS|3042053..3043006|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700381|ref|YP_001089278.1| putative penicillin-binding protein repressor [Clostridium difficile 630])
ATTATG
>2340|CDS|3036714..3038258|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700376|ref|YP_001089273.1| putative signaling protein [Clostridium difficile 630])
CAGTTG
>2199|CDS|2846193..2847593|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700226|ref|YP_001089123.1| putative amino acid permease [Clostridium difficile 630])
CAGCTA
>2137|CDS|2762690..2763604|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700156|ref|YP_001089053.1| ribonuclease Z [Clostridium difficile 630])
TTTAAA
>1682|CDS|2172222..2172899|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699632|ref|YP_001088529.1| hypothetical protein CD2015 [Clostridium difficile 630])
TTATAC
>1611|CDS|2083722..2085077|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699537|ref|YP_001088434.1| hypothetical protein CD1928 [Clostridium difficile 630])
GATGAG
>1370|CDS|1804995..1805612|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699233|ref|YP_001088130.1| hypothetical protein CD1629 [Clostridium difficile 630])
GATAAA
>876|CDS|1144100..1144891|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698656|ref|YP_001087553.1| putative phosphatase [Clostridium difficile 630])
ATTTAT
>749|CDS|990186..991343|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698459|ref|YP_001087356.1| glucose-1-phosphate adenylyltransferase [Clostridium difficile 630])
AGGAGG
>652|CDS|874971..875984|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698356|ref|YP_001087253.1| LacI family transcriptional regulator [Clostridium difficile 630])
GTTAAA
>594|CDS|802336..804252|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698296|ref|YP_001087193.1| putative bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase [Clostridium difficile 630])
AAAGGC
>487|CDS|637964..639274|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698172|ref|YP_001087069.1| hypothetical protein CD0594 [Clostridium difficile 630])
GAAAAA
>390|CDS|493127..493729|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698040|ref|YP_001086937.1| putative hydrolase [Clostridium difficile 630])
CCTTGT
>206|CDS|275694..276167|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697789|ref|YP_001086686.1| phosphoribosylaminoimidazole carboxylase catalytic subunit [Clostridium difficile 630])
AGAATT
>3042|CDS|4066944..4068329|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701265|ref|YP_001090162.1| hypothetical protein CD3638 [Clostridium difficile 630])
AAAAAT
>2615|CDS|3446117..3446863|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700739|ref|YP_001089636.1| putative flavodoxin [Clostridium difficile 630])
ATACTA
>1506|CDS|1965041..1965841|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699383|ref|YP_001088280.1| amino acid ABC transporter, substrate-binding protein [Clostridium difficile 630])
GATAAG
>1200|CDS|1533571..1534434|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699045|ref|YP_001087942.1| hypothetical protein CD1441 [Clostridium difficile 630])
AAAGCA
>X3629|ORF|1522990..1523592|1|(gi|260681769|ref|NC_013315.1|)
TGTATA
>3043|CDS|4068602..4069480|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126701266|ref|YP_001090163.1| LysR family transcriptional regulator [Clostridium difficile 630])
TCATTT
>3038|CDS|4061634..4063718|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701257|ref|YP_001090154.1| putative transcription antiterminator [Clostridium difficile 630])
ATAAAA
>2753|CDS|3673780..3674685|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700902|ref|YP_001089799.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium difficile 630])
AAGATT
>2534|CDS|3313198..3314469|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700650|ref|YP_001089547.1| putative aminotransferase [Clostridium difficile 630])
CTTTGG
>2185|CDS|2824321..2826093|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700212|ref|YP_001089109.1| fibronectin-binding protein [Clostridium difficile 630])
GGTTAA
>1972|CDS|2550832..2551878|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699968|ref|YP_001088865.1| glycine reductase complex component B gamma subunit [Clostridium difficile 630])
ACTTCT
>1451|CDS|1901281..1901781|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699319|ref|YP_001088216.1| putative molybdenum cofactor biosynthesis protein [Clostridium difficile 630])
AAAAAA
>684|CDS|911177..912184|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698389|ref|YP_001087286.1| hypothetical protein CD0809 [Clostridium difficile 630])
GGTGTT
>628|CDS|844084..844896|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698330|ref|YP_001087227.1| amino acid ABC transporter, substrate-binding protein [Clostridium difficile 630])
AGCTGC
>415|CDS|521553..522602|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698067|ref|YP_001086964.1| putative sugar-phosphate dehydrogenase [Clostridium difficile 630])
AATATA
>296|CDS|392230..393156|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697894|ref|YP_001086791.1| hypothetical protein CD0322 [Clostridium difficile 630])
CAATAA
>273|CDS|356798..357868|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697867|ref|YP_001086764.1| putative iron-sulfur-binding protein [Clostridium difficile 630])
AATTAA
>260|CDS|342082..342474|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697851|ref|YP_001086748.1| hypothetical protein CD0279 [Clostridium difficile 630])
ATGTAG
>154|CDS|209188..209898|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697730|ref|YP_001086627.1| putative two-component response regulator [Clostridium difficile 630])
GTAGAT
>144|CDS|196016..197053|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697720|ref|YP_001086617.1| hypothetical protein CD0148 [Clostridium difficile 630])
GATGAT
>2811|CDS|3749044..3749442|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700989|ref|YP_001089886.1| hypothetical protein CD3368A [Clostridium difficile 630])
GAGGAA
>2684|CDS|3580653..3581243|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700824|ref|YP_001089721.1| putative nitroreductase [Clostridium difficile 630])
CTGAAT
>2376|CDS|3098224..3100116|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700415|ref|YP_001089312.1| cell surface protein [Clostridium difficile 630])
TTTACT
>1314|CDS|1731009..1731683|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699170|ref|YP_001088067.1| putative manganese-containing catalase [Clostridium difficile 630])
ACCTTT
>1185|CDS|1511000..1511806|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699027|ref|YP_001087924.1| MerR family transcriptional regulator [Clostridium difficile 630])
ACTAAA
>759|CDS|1003696..1003893|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698469|ref|YP_001087366.1| cold shock protein [Clostridium difficile 630])
AAATAG
>506|CDS|663700..663927|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698198|ref|YP_001087095.1| hypothetical protein CD0620 [Clostridium difficile 630])
CTTAGT
>X5166|ORF|4013217..4013942|2|(gi|260681769|ref|NC_013315.1|)
A
>X4815|ORF|3521897..3522514|1|(gi|260681769|ref|NC_013315.1|)
GCAAAG
>4766|ORF|3443565..3444860|2|(gi|260681769|ref|NC_013315.1|)
CAAATC
>X4729|ORF|3382660..3383811|2|(gi|260681769|ref|NC_013315.1|)
AAAAAT
>4389|ORF|2870641..2871714|2|(gi|260681769|ref|NC_013315.1|)
CTGGAC
>X4173|ORF|2560209..2560958|2|(gi|260681769|ref|NC_013315.1|)
GTTATG
>X3826|ORF|1986914..1988542|2|(gi|260681769|ref|NC_013315.1|)
GGAGGA
>3719|ORF|1700806..1701372|1|(gi|260681769|ref|NC_013315.1|)
TAATAA
>X3517|ORF|1238543..1239475|1|(gi|260681769|ref|NC_013315.1|)
AGAACT
>X3324|ORF|680169..680975|1|(gi|260681769|ref|NC_013315.1|)
AAATAT
>3287|ORF|602481..604403|1|(gi|260681769|ref|NC_013315.1|)
AT
>2623|CDS|3457851..3459296|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700748|ref|YP_001089645.1| putative 6-phospho-beta-glucosidase [Clostridium difficile 630])
GGAAAC
>2318|CDS|3007428..3008294|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700351|ref|YP_001089248.1| LysR family transcriptional regulator [Clostridium difficile 630])
AAATAT
>2262|CDS|2930787..2931710|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700295|ref|YP_001089192.1| putative calcium-chelating exported protein [Clostridium difficile 630])
AAATCT
>2040|CDS|2640690..2641475|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700046|ref|YP_001088943.1| IclR family transcriptional regulator [Clostridium difficile 630])
TTTTTA
>1911|CDS|2476666..2478030|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699891|ref|YP_001088788.1| putative sodium:solute symporter [Clostridium difficile 630])
TAAAGA
>1909|CDS|2470257..2470994|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699887|ref|YP_001088784.1| hypothetical protein CD2272 [Clostridium difficile 630])
TCAATA
>1800|CDS|2327863..2328489|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699766|ref|YP_001088663.1| putative endonuclease/exonuclease/phosphatase [Clostridium difficile 630])
AGGTTA
>1782|CDS|2303644..2304465|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699744|ref|YP_001088641.1| hypothetical protein CD2127 [Clostridium difficile 630])
ATTACT
>1768|CDS|2280576..2281337|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699728|ref|YP_001088625.1| DeoR family transcriptional regulator [Clostridium difficile 630])
ATGTAA
>1733|CDS|2232342..2233697|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699692|ref|YP_001088589.1| xanthine permease [Clostridium difficile 630])
AAATAA
>1704|CDS|2195796..2196350|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699659|ref|YP_001088556.1| putative transcriptional regulator [Clostridium difficile 630])
TAAAAA
>1681|CDS|2169688..2171340|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699631|ref|YP_001088528.1| dihydroxy-acid dehydratase [Clostridium difficile 630])
AGCAGT
>1576|CDS|2048537..2048881|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699492|ref|YP_001088389.1| hypothetical protein CD1880 [Clostridium difficile 630])
ATACAG
>1572|CDS|2042461..2042778|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699452|ref|YP_001088349.1| hypothetical protein CD1843 [Clostridium difficile 630])
AATTCT
>1421|CDS|1869842..1870468|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699287|ref|YP_001088184.1| TetR family transcriptional regulator [Clostridium difficile 630])
GCAACA
>1296|CDS|1654687..1655628|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699151|ref|YP_001088048.1| putative ATP phosphoribosyltransferase regulatory subunit [Clostridium difficile 630])
TATGTA
>1263|CDS|1606067..1606711|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699114|ref|YP_001088011.1| hypothetical protein CD1510 [Clostridium difficile 630])
ATCTTG
>1227|CDS|1560611..1563649|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699073|ref|YP_001087970.1| cell surface protein (putative penicillin-binding protein) [Clostridium difficile 630])
AAGAAA
>1192|CDS|1518811..1519632|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699034|ref|YP_001087931.1| putative exported polysaccharide deacetylase [Clostridium difficile 630])
AAATAA
>1181|CDS|1500699..1502051|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699021|ref|YP_001087918.1| putative drug/sodium antiporter [Clostridium difficile 630])
AATAAG
>1162|CDS|1477608..1478468|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699001|ref|YP_001087898.1| putative muramoyltetrapeptide carboxypeptidase [Clostridium difficile 630])
TAAATT
>1156|CDS|1471389..1472276|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698995|ref|YP_001087892.1| hypothetical protein CD1393 [Clostridium difficile 630])
AAAGAA
>881|CDS|1149533..1150273|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698662|ref|YP_001087559.1| hypothetical protein CD1075 [Clostridium difficile 630])
GAGGAA
>855|CDS|1123736..1124533|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698633|ref|YP_001087530.1| putative inorganic polyphosphate/ATP-NAD kinase [Clostridium difficile 630])
TGAAAA
>659|CDS|885137..886141|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698363|ref|YP_001087260.1| putative stage IV sporulation protein [Clostridium difficile 630])
TTAAAT
>591|CDS|797583..799334|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698292|ref|YP_001087189.1| putative adenosylcobamide-dependent radical SAM superfamily protein [Clostridium difficile 630])
AGTAGA
>515|CDS|675808..677178|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698208|ref|YP_001087105.1| putative drug/sodium antiporter [Clostridium difficile 630])
AAAAAT
>413|CDS|520024..520341|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698065|ref|YP_001086962.1| quaternary ammonium compound-resistance protein [Clostridium difficile 630])
TATCTA
>167|CDS|225601..226236|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697743|ref|YP_001086640.1| redox-sensing transcriptional repressor Rex [Clostridium difficile 630])
AGGAAA
>117|CDS|163760..165052|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697693|ref|YP_001086590.1| putative thiosulfate sulfurtransferase [Clostridium difficile 630])
GGGAGA
>4955|ORF|3721812..3722519|2|(gi|260681769|ref|NC_013315.1|)
AAGTTA
>X4900|ORF|3649468..3650580|2|(gi|260681769|ref|NC_013315.1|)
TATTTA
>X4887|ORF|3632240..3633535|2|(gi|260681769|ref|NC_013315.1|)
TTATAA
>X4817|ORF|3524787..3525245|1|(gi|260681769|ref|NC_013315.1|)
ATTTAA
>X4806|ORF|3506999..3507448|2|(gi|260681769|ref|NC_013315.1|)
GAGGAG
>X4781|ORF|3466662..3468353|2|(gi|260681769|ref|NC_013315.1|)
AAGATT
>X4545|ORF|3120837..3121952|1|(gi|260681769|ref|NC_013315.1|)
CATCCT
>X4531|ORF|3102998..3103480|2|(gi|260681769|ref|NC_013315.1|)
ATCTAT
>X4210|ORF|2613312..2614625|1|(gi|260681769|ref|NC_013315.1|)
TGGAAA
>X4005|ORF|2306051..2307052|2|(gi|260681769|ref|NC_013315.1|)
ATTTCA
>3913|ORF|2166035..2166400|2|(gi|260681769|ref|NC_013315.1|)
TGTGTA
>X3442|ORF|1035797..1036741|1|(gi|260681769|ref|NC_013315.1|)
AGCATT
>X3281|ORF|588776..589177|2|(gi|260681769|ref|NC_013315.1|)
AA
>X3199|ORF|390194..391114|2|(gi|260681769|ref|NC_013315.1|)
AAGCCC
>X3173|ORF|307652..308599|1|(gi|260681769|ref|NC_013315.1|)
TGGATA
>3021|CDS|4016925..4017374|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126701239|ref|YP_001090136.1| hypothetical protein CD3613 [Clostridium difficile 630])
AGATTT
>3012|CDS|4006920..4007651|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126701229|ref|YP_001090126.1| putative ATPase [Clostridium difficile 630])
AAAAAT
>2995|CDS|3981069..3983612|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701211|ref|YP_001090108.1| putative ABC transporter, permease protein [Clostridium difficile 630])
GACATG
>2504|CDS|3270555..3271748|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700618|ref|YP_001089515.1| putative iron ABC transporter, ATP-binding protein [Clostridium difficile 630])
TTATTA
>2482|CDS|3242772..3243548|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700593|ref|YP_001089490.1| hypothetical protein CD2972 [Clostridium difficile 630])
ACATTT
>2472|CDS|3229043..3230449|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700583|ref|YP_001089480.1| putative peptidoglycan-binding exported protein [Clostridium difficile 630])
TTATTT
>2418|CDS|3159502..3159936|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700460|ref|YP_001089357.1| MarR family transcriptional regulator [Clostridium difficile 630])
TAAAAA
>2292|CDS|2969799..2970677|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700325|ref|YP_001089222.1| LysR family transcriptional regulator [Clostridium difficile 630])
AACGCT
>2268|CDS|2939875..2940333|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700301|ref|YP_001089198.1| hypothetical protein CD2687 [Clostridium difficile 630])
TATATC
>2009|CDS|2599460..2599963|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700011|ref|YP_001088908.1| hypothetical protein CD2396 [Clostridium difficile 630])
GTTCTT
>1928|CDS|2496512..2496886|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699921|ref|YP_001088818.1| putative regulatory protein [Clostridium difficile 630])
ATTTAA
>1922|CDS|2494728..2495417|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699904|ref|YP_001088801.1| two-component system response regulator [Clostridium difficile 630])
GATTGA
>1897|CDS|2448663..2450195|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699873|ref|YP_001088770.1| hypothetical protein CD2255 [Clostridium difficile 630])
TATAAA
>1812|CDS|2341413..2342609|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699779|ref|YP_001088676.1| putative RNA-binding protein [Clostridium difficile 630])
AAAAAC
>1797|CDS|2320662..2321282|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699761|ref|YP_001088658.1| hypothetical protein CD2144 [Clostridium difficile 630])
GAAGAT
>1778|CDS|2296643..2297575|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699739|ref|YP_001088636.1| putative cations transporter [Clostridium difficile 630])
AAATAA
>1771|CDS|2284343..2286841|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699732|ref|YP_001088629.1| putative copper-transporting P-type ATPase [Clostridium difficile 630])
TATAAG
>1710|CDS|2203605..2204318|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699667|ref|YP_001088564.1| putative 23S RNA and tRNA pseudouridine synthase [Clostridium difficile 630])
AAATCA
>1334|CDS|1760451..1761080|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699194|ref|YP_001088091.1| hypothetical protein CD1590 [Clostridium difficile 630])
GTTCCA
>1218|CDS|1549856..1550320|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699063|ref|YP_001087960.1| putative 5-nitroimidazole reductase [Clostridium difficile 630])
AAAGCT
>1199|CDS|1532362..1533048|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699044|ref|YP_001087941.1| hypothetical protein CD1440 [Clostridium difficile 630])
ATTTTA
>1141|CDS|1453708..1453914|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698980|ref|YP_001087877.1| putative phage regulatory protein [Clostridium difficile 630])
TTCAGA
>1068|CDS|1370053..1371873|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698902|ref|YP_001087799.1| putative mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Clostridium difficile 630])
GTTCCT
>817|CDS|1056652..1057491|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698592|ref|YP_001087489.1| hypothetical protein CD1008 [Clostridium difficile 630])
ACTTAT
>733|CDS|969569..970426|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698442|ref|YP_001087339.1| hypothetical protein CD0865 [Clostridium difficile 630])
ATATAG
>587|CDS|791089..793464|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698288|ref|YP_001087185.1| putative DNA mismatch repair protein [Clostridium difficile 630])
ATTAAA
>546|CDS|728503..728775|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698243|ref|YP_001087140.1| hypothetical protein CD0664B [Clostridium difficile 630])
TGAAGA
>540|CDS|709139..709690|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698237|ref|YP_001087134.1| putative transcriptional regulator [Clostridium difficile 630])
AATTAT
>521|CDS|682710..683150|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698215|ref|YP_001087112.1| putative acetyltransferase [Clostridium difficile 630])
TCTATC
>361|CDS|2473843..2475960|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126697992|ref|YP_001086889.1| putative DNA topoisomerase [Clostridium difficile 630])
TAAAAA
>287|CDS|375380..376465|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697882|ref|YP_001086779.1| hypothetical protein CD0310 [Clostridium difficile 630])
TGATTT
>2032|CDS|2631142..2632602|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700037|ref|YP_001088934.1| sodium/proton-dependent alanine carrier protein [Clostridium difficile 630])
CATGAG
>X4752|ORF|3418297..3419514|1|(gi|260681769|ref|NC_013315.1|)
ATTATT
>X4628|ORF|3241903..3242445|2|(gi|260681769|ref|NC_013315.1|)
TCTATG
>4550|ORF|3127859..3128689|2|(gi|260681769|ref|NC_013315.1|)
AAATAC
>X4492|ORF|3038573..3039394|2|(gi|260681769|ref|NC_013315.1|)
GGAATA
>4390|ORF|2872102..2873238|2|(gi|260681769|ref|NC_013315.1|)
ATACTT
>X4375|ORF|2851428..2852225|2|(gi|260681769|ref|NC_013315.1|)
AAATTT
>X3903|ORF|2142073..2142840|2|(gi|260681769|ref|NC_013315.1|)
AGATTA
>X3657|ORF|1582047..1582961|1|(gi|260681769|ref|NC_013315.1|)
ATTAAA
>X3447|ORF|1049308..1050492|1|(gi|260681769|ref|NC_013315.1|)
AAATAG
>X3328|ORF|688458..689378|1|(gi|260681769|ref|NC_013315.1|)
ATTGAA
>X3306|ORF|648657..649571|1|(gi|260681769|ref|NC_013315.1|)
ATATTT
>X3109|ORF|91427..91936|1|(gi|260681769|ref|NC_013315.1|)
AGAAGC
>3057|CDS|4083378..4084433|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126701280|ref|YP_001090177.1| hypothetical protein CD3653 [Clostridium difficile 630])
AAAAGA
>3025|CDS|4049696..4050655|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701243|ref|YP_001090140.1| hypothetical protein CD3617 [Clostridium difficile 630])
AA
>2970|CDS|3955990..3956964|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701184|ref|YP_001090081.1| BirA bifunctional protein [includes: biotin operon repressor and biotin--[acetyl-CoA-carboxylase] synthetase [Clostridium difficile 630])
GAGAAA
>2809|CDS|3746746..3747441|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700987|ref|YP_001089884.1| hypothetical protein CD3367 [Clostridium difficile 630])
ATAAAT
>2768|CDS|3691079..3692446|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700918|ref|YP_001089815.1| transporter [Clostridium difficile 630])
ATAAAT
>2737|CDS|3654519..3655193|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700886|ref|YP_001089783.1| two-component response regulator [Clostridium difficile 630])
ATAAGT
>2641|CDS|3510693..3511145|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700776|ref|YP_001089673.1| SsrA-binding protein [Clostridium difficile 630])
GACAGG
>2300|CDS|2981767..2982441|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700333|ref|YP_001089230.1| putative sortase B [Clostridium difficile 630])
TCATGG
>2088|CDS|2694528..2695361|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700095|ref|YP_001088992.1| metallo beta-lactamase superfamily lipoprotein [Clostridium difficile 630])
AAATAG
>2069|CDS|2671389..2672321|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700076|ref|YP_001088973.1| glucokinase [Clostridium difficile 630])
GAGCAG
>2041|CDS|2641734..2643278|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700047|ref|YP_001088944.1| putative nitrite/sulphite reductase [Clostridium difficile 630])
TGATAA
>2010|CDS|2601413..2602270|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700013|ref|YP_001088910.1| hypothetical protein CD2398 [Clostridium difficile 630])
CTTAGA
>1818|CDS|2349761..2350483|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699785|ref|YP_001088682.1| iron-sulfur binding protein [Clostridium difficile 630])
GTAGAT
>1749|CDS|2256562..2257599|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699709|ref|YP_001088606.1| putative sigma-54-dependent transcriptional regulator [Clostridium difficile 630])
AAATAG
>1534|CDS|1995546..1996529|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699413|ref|YP_001088310.1| sucrose operon repressor [Clostridium difficile 630])
CAATAA
>1283|CDS|1634438..1635202|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699136|ref|YP_001088033.1| ABC transporter, ATP-binding protein [Clostridium difficile 630])
ATGACT
>1253|CDS|1597381..1598922|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699103|ref|YP_001088000.1| putative membrane protein (virulence factor (MviN) homologue) [Clostridium difficile 630])
TGCATT
>1097|CDS|1408070..1408519|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698934|ref|YP_001087831.1| MarR family transcriptional regulator [Clostridium difficile 630])
CAAAGA
>1036|CDS|1336693..1337034|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698868|ref|YP_001087765.1| hypothetical protein CD1271 [Clostridium difficile 630])
ATAATG
>941|CDS|1224678..1225934|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698763|ref|YP_001087660.1| hypothetical protein CD1168 [Clostridium difficile 630])
ATTTTC
>827|CDS|1071181..1071867|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698603|ref|YP_001087500.1| hypothetical protein CD1019 [Clostridium difficile 630])
AGATTA
>664|CDS|890257..891537|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698368|ref|YP_001087265.1| putative ATP/GTP-binding protein [Clostridium difficile 630])
GTACAT
>549|CDS|731316..732236|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698246|ref|YP_001087143.1| putative lantibiotic ABC transporter,ATP-binding protein [Clostridium difficile 630])
CTGGTA
>545|CDS|728038..728280|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698242|ref|YP_001087139.1| hypothetical protein CD0664A [Clostridium difficile 630])
GGTGGT
>195|CDS|261160..264585|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126697774|ref|YP_001086671.1| putative DNA repair protein [Clostridium difficile 630])
TGGACA
>X4382|ORF|2860932..2861564|2|(gi|260681769|ref|NC_013315.1|)
AAAGTA
>X4022|ORF|2327860..2328486|2|(gi|260681769|ref|NC_013315.1|)
TACATT
>X3456|ORF|1062324..1063814|1|(gi|260681769|ref|NC_013315.1|)
GTAAAA
>X3351|ORF|769525..771264|2|(gi|260681769|ref|NC_013315.1|)
AAAATG
>X3090|ORF|23419..24621|2|(gi|260681769|ref|NC_013315.1|)
AATATA
>2801|CDS|3734465..3734785|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700976|ref|YP_001089873.1| putative transcriptional regulator [Clostridium difficile 630])
ACTTAG
>2767|CDS|3688353..3689030|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700916|ref|YP_001089813.1| hypothetical protein CD3297 [Clostridium difficile 630])
ATAAAG
>2301|CDS|2987705..2988640|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700334|ref|YP_001089231.1| polysaccharide deacetylase [Clostridium difficile 630])
AACTCT
>2008|CDS|2598379..2599044|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700010|ref|YP_001088907.1| hypothetical protein CD2395 [Clostridium difficile 630])
TAAATT
>1779|CDS|2297673..2299451|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699740|ref|YP_001088637.1| putative multiprotein-complex assembly protein [Clostridium difficile 630])
GATAGT
>1772|CDS|2287925..2289745|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699733|ref|YP_001088630.1| GTP-binding protein [Clostridium difficile 630])
AGACAA
>1582|CDS|2053074..2053454|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699505|ref|YP_001088402.1| hypothetical protein CD1895 [Clostridium difficile 630])
GTTACT
>1556|CDS|2020937..2021377|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699435|ref|YP_001088332.1| MarR family transcriptional regulator [Clostridium difficile 630])
CATTGA
>1375|CDS|1811038..1811613|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699238|ref|YP_001088135.1| tellurium resistance protein [Clostridium difficile 630])
GAATAA
>660|CDS|886369..887250|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698364|ref|YP_001087261.1| putative N-acetylmuramoyl-L-alanine amidase [Clostridium difficile 630])
GATGCG
>364|CDS|457210..457422|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698009|ref|YP_001086906.1| integrase (partial) [Clostridium difficile 630])
AGAA
>332|CDS|4042497..4042733|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697939|ref|YP_001086836.1| hypothetical protein CD0369 [Clostridium difficile 630])
AAAAGA
>174|CDS|232495..233679|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126697750|ref|YP_001086647.1| cyclopropane-fatty-acyl-phospholipid synthase [Clostridium difficile 630])
TAATTG
>X4549|ORF|3124792..3125961|2|(gi|260681769|ref|NC_013315.1|)
GTATAA
>X3700|ORF|1674631..1675335|2|(gi|260681769|ref|NC_013315.1|)
ATAATT
>2543|CDS|3324835..3325764|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700659|ref|YP_001089556.1| proline iminopeptidase [Clostridium difficile 630])
CGAACG
>2314|CDS|3000304..3002421|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700347|ref|YP_001089244.1| putative sigma-54-interacting regulatory protein [Clostridium difficile 630])
AACAAG
>2245|CDS|2907489..2908583|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700276|ref|YP_001089173.1| putative GTP-binding protein [Clostridium difficile 630])
GATTTA
>2061|CDS|2659732..2660676|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700067|ref|YP_001088964.1| ribosomal protein L11 methyltransferase [Clostridium difficile 630])
TAAGCT
>1896|CDS|2447788..2448471|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699872|ref|YP_001088769.1| putative amino acid recemase [Clostridium difficile 630])
CACTAA
>1777|CDS|2295614..2296123|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699738|ref|YP_001088635.1| hypothetical protein CD2121 [Clostridium difficile 630])
AAAGAA
>1773|CDS|2289841..2290746|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699734|ref|YP_001088631.1| thioredoxin reductase [Clostridium difficile 630])
ATAAAT
>1472|CDS|1922816..1923358|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699343|ref|YP_001088240.1| putative transcriptional regulator [Clostridium difficile 630])
GCAGTC
>1066|CDS|1368346..1368483|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698899|ref|YP_001087796.1| hypothetical protein CD1301A [Clostridium difficile 630])
GAAGAA
>717|CDS|949070..949420|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698425|ref|YP_001087322.1| putative nuclease [Clostridium difficile 630])
TATTCC
>589|CDS|794359..796056|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698290|ref|YP_001087187.1| arginyl-tRNA synthetase [Clostridium difficile 630])
CGGAAA
>580|CDS|780056..780736|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698281|ref|YP_001087178.1| hypothetical protein CD0702 [Clostridium difficile 630])
ATTTAA
>477|CDS|616058..617515|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698158|ref|YP_001087055.1| NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [Clostridium difficile 630])
TTAGGG
>X4207|ORF|2605309..2605737|2|(gi|260681769|ref|NC_013315.1|)
GGATTT
>3928|ORF|2193884..2194645|2|(gi|260681769|ref|NC_013315.1|)
AAAAAA
>X3402|ORF|945663..946520|1|(gi|260681769|ref|NC_013315.1|)
GATTAG
>X3318|ORF|666126..667367|1|(gi|260681769|ref|NC_013315.1|)
GTGAAA
>X3254|ORF|520477..521154|2|(gi|260681769|ref|NC_013315.1|)
ATTAGA
>1816|CDS|2346840..2347760|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699783|ref|YP_001088680.1| patatin-like phospholipase [Clostridium difficile 630])
AGAGCT
>1230|CDS|1566914..1568686|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699076|ref|YP_001087973.1| ABC transporter, ATP-binding/permease protein [Clostridium difficile 630])
AGTGAA
>631|CDS|847033..848181|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698333|ref|YP_001087230.1| putative cysteine desulfurase [Clostridium difficile 630])
AATGAA
>21|CDS|40792..41265|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697589|ref|YP_001086486.1| transcriptional regulator [Clostridium difficile 630])
GATTAT
>11|CDS|15951..16457|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697578|ref|YP_001086475.1| putative small-molecule-binding protein [Clostridium difficile 630])
ACAGAG
>X4866|ORF|3599050..3600240|2|(gi|260681769|ref|NC_013315.1|)
TTCTCT
>3861|ORF|2079948..2080304|2|(gi|260681769|ref|NC_013315.1|)
TTTTAT
>369|CDS|463472..464869|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698015|ref|YP_001086912.1| putative arginine utilization sigma-54 dependent regulatory protein [Clostridium difficile 630])
TATCAA
>4763|ORF|3438346..3439422|2|(gi|260681769|ref|NC_013315.1|)
AAAAGC
>X3645|ORF|1558782..1558955|1|(gi|260681769|ref|NC_013315.1|)
TATATA
>2240|CDS|2901669..2902013|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700271|ref|YP_001089168.1| hypothetical protein CD2657 [Clostridium difficile 630])
ATAGAT
>X4789|ORF|3481384..3483000|2|(gi|260681769|ref|NC_013315.1|)
CTAA
>X3614|ORF|1494699..1496126|2|(gi|260681769|ref|NC_013315.1|)
CTAATA
>2470|CDS|3227712..3228029|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700581|ref|YP_001089478.1| hypothetical protein CD2961 [Clostridium difficile 630])
TATTGG
>2401|CDS|3132622..3133065|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700443|ref|YP_001089340.1| MarR family regulatory protein [Clostridium difficile 630])
GGAGGA
>2184|CDS|2822994..2824025|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700211|ref|YP_001089108.1| low-specificity L-threonine aldolase [Clostridium difficile 630])
ATAGGT
>1918|CDS|2486906..2487325|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699899|ref|YP_001088796.1| hypothetical protein CD2284 [Clostridium difficile 630])
GTGTTA
>1787|CDS|2309598..2311442|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699750|ref|YP_001088647.1| putative signaling protein [Clostridium difficile 630])
GTAACT
>1500|CDS|1955044..1956210|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699377|ref|YP_001088274.1| hypothetical protein CD1768 [Clostridium difficile 630])
CTCGTA
>1241|CDS|1581472..1581936|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699091|ref|YP_001087988.1| hypothetical protein CD1487 [Clostridium difficile 630])
AAAACA
>510|CDS|668070..669368|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698203|ref|YP_001087100.1| putative phage-related replicative helicase [Clostridium difficile 630])
CTAAAT
>411|CDS|517323..517994|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698063|ref|YP_001086960.1| two-component response regulator [Clostridium difficile 630])
ATGGAT
>3189|ORF|369221..369862|2|(gi|260681769|ref|NC_013315.1|)
TAAAAT
>3156|ORF|256822..258216|1|(gi|260681769|ref|NC_013315.1|)
TACAAT
>2690|CDS|3587125..3587373|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700832|ref|YP_001089729.1| hypothetical protein CD3213 [Clostridium difficile 630])
GAAA
>2422|CDS|3162351..3163169|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700464|ref|YP_001089361.1| hypothetical protein CD2848 [Clostridium difficile 630])
TTAAAG
>2413|CDS|3151406..3152908|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700455|ref|YP_001089352.1| putative two-component sensor histidine kinase [Clostridium difficile 630])
GGAGTA
>2396|CDS|3124795..3125985|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700438|ref|YP_001089335.1| putative peptidase [Clostridium difficile 630])
GAGGTA
>2205|CDS|2854483..2857596|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700232|ref|YP_001089129.1| isoleucyl-tRNA synthetase [Clostridium difficile 630])
ATAAAA
>1820|CDS|2351729..2352787|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699787|ref|YP_001088684.1| putative Sodium:dicarboxylate symporter [Clostridium difficile 630])
CTGTAG
>1726|CDS|2223167..2224789|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699685|ref|YP_001088582.1| ABC transporter, ATP-binding protein [Clostridium difficile 630])
GGAAAA
>1540|CDS|2004062..2004718|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699419|ref|YP_001088316.1| putative two-component sensor histidine kinase (partial) [Clostridium difficile 630])
ATTAGG
>638|CDS|857871..858929|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698340|ref|YP_001087237.1| Ca2+/Na+ antiporter [Clostridium difficile 630])
TATTAT
>554|CDS|739817..740521|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698252|ref|YP_001087149.1| hypothetical protein CD0673 [Clostridium difficile 630])
TAGCGA
>485|CDS|635362..635754|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698170|ref|YP_001087067.1| hypothetical protein CD0592 [Clostridium difficile 630])
TTGTAC
>454|CDS|577884..578597|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698131|ref|YP_001087028.1| putative spore-cortex-lytic protein [Clostridium difficile 630])
AAAGAA
>421|CDS|533367..536198|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698097|ref|YP_001086994.1| putative transcription antiterminator [Clostridium difficile 630])
AGTATC
>365|CDS|457449..457601|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698010|ref|YP_001086907.1| hypothetical protein CD0437A [Clostridium difficile 630])
AATATA
>344|CDS|437001..438581|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697960|ref|YP_001086857.1| asparagine synthetase (glutamine-hydrolyzing) [Clostridium difficile 630])
TATTTT
>2640|CDS|3507481..3507705|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700775|ref|YP_001089672.1| hypothetical protein CD3156B [Clostridium difficile 630])
AAAGGG
>1106|CDS|1419670..1420797|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698943|ref|YP_001087840.1| putative cell wall biosynthesis protein [Clostridium difficile 630])
TAATCA
>5024|ORF|3836030..3837172|1|(gi|260681769|ref|NC_013315.1|)
TAAGTT
>X4945|ORF|3710347..3711177|2|(gi|260681769|ref|NC_013315.1|)
CAAAAA
>X4106|ORF|2450941..2451522|1|(gi|260681769|ref|NC_013315.1|)
T
>4006|ORF|2307798..2308229|1|(gi|260681769|ref|NC_013315.1|)
CATATA
>2617|CDS|3447416..3448195|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700741|ref|YP_001089638.1| putative nitroreductase [Clostridium difficile 630])
AACTGT
>2202|CDS|2850294..2850863|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700229|ref|YP_001089126.1| TetR family transcriptional regulator [Clostridium difficile 630])
GTTAAT
>1892|CDS|2442917..2444008|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699868|ref|YP_001088765.1| hypothetical protein CD2250 [Clostridium difficile 630])
AATACA
>1528|CDS|1988675..1989589|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699407|ref|YP_001088304.1| LysR family transcriptional regulator [Clostridium difficile 630])
TGTAAA
>1324|CDS|1745654..1747507|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699182|ref|YP_001088079.1| putative two-component histidine kinase [Clostridium difficile 630])
TTCGGA
>1317|CDS|624470..625576|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699175|ref|YP_001088072.1| transposase-like protein B [Clostridium difficile 630])
ACAATT
>1008|CDS|1305596..1305967|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698838|ref|YP_001087735.1| hypothetical protein CD1242 [Clostridium difficile 630])
ATAGCT
>186|CDS|246212..247240|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697763|ref|YP_001086660.1| hypothetical protein CD0190 [Clostridium difficile 630])
AAAAAT
>X4448|ORF|2957885..2958535|2|(gi|260681769|ref|NC_013315.1|)
ATTATC
>X3991|ORF|2279628..2280299|2|(gi|260681769|ref|NC_013315.1|)
AAAACA
>X3686|ORF|1639100..1639948|2|(gi|260681769|ref|NC_013315.1|)
CAAGAA
>1632|CDS|2104450..2105850|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699558|ref|YP_001088455.1| putative two-component sensor histidine kinase [Clostridium difficile 630])
CACCTT
>2538|CDS|3317112..3318464|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700654|ref|YP_001089551.1| proton-dependent oligopeptide transporter [Clostridium difficile 630])
TGAGGA
>1854|CDS|2397769..2399130|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699823|ref|YP_001088720.1| aldehyde dehydrogenase [Clostridium difficile 630])
TAAAAA
>1581|CDS|2052176..2052565|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699504|ref|YP_001088401.1| putative plasmid-related protein [Clostridium difficile 630])
GAGTAA
>1538|CDS|2000453..2001694|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699417|ref|YP_001088314.1| putative pyridoxal-dependent decarboxylase [Clostridium difficile 630])
TTGAG
>1535|CDS|1996869..1998347|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699414|ref|YP_001088311.1| putative sucrose-6-phosphate hydrolase [Clostridium difficile 630])
AAGGTA
>1509|CDS|1967495..1967854|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699386|ref|YP_001088283.1| putative arsenate reductase [Clostridium difficile 630])
TAAAAG
>1435|CDS|1882214..1883716|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699302|ref|YP_001088199.1| putative sodium:amino acid symporter [Clostridium difficile 630])
CATTTA
>1373|CDS|1807307..1809178|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699236|ref|YP_001088133.1| asparagine synthetase [Clostridium difficile 630])
ATGTCG
>1304|CDS|1661491..1662831|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699159|ref|YP_001088056.1| putative amino acid permease [Clostridium difficile 630])
GACTAG
>1193|CDS|1519853..1522969|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699035|ref|YP_001087932.1| putative exonuclease [Clostridium difficile 630])
AGAAGA
>1003|CDS|1299268..1299609|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698833|ref|YP_001087730.1| hypothetical protein CD1236 [Clostridium difficile 630])
TTTTGA
>537|CDS|705131..706384|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698234|ref|YP_001087131.1| putative chloride ion channel protein [Clostridium difficile 630])
AATTTC
>520|CDS|681357..682244|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698214|ref|YP_001087111.1| putative radical SAM superfamily protein [Clostridium difficile 630])
ATTTTT
>464|CDS|590180..591091|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698142|ref|YP_001087039.1| putative iron-sulfur cluster protein [Clostridium difficile 630])
ATAAGT
>382|CDS|480227..482467|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698032|ref|YP_001086929.1| putative antibiotic resistance ABC transporter,ATP-binding protein [Clostridium difficile 630])
TCAATA
>2643|CDS|3513480..3514049|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700778|ref|YP_001089675.1| putative acetyltransferase [Clostridium difficile 630])
TTATGA
>3112|ORF|105023..105427|2|(gi|260681769|ref|NC_013315.1|)
G
>2502|CDS|3267133..3269229|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700616|ref|YP_001089513.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium difficile 630])
AGTGTG
>X3529|ORF|1287864..1289378|2|(gi|260681769|ref|NC_013315.1|)
GACCAG
>2642|CDS|3511729..3512568|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700777|ref|YP_001089674.1| hypothetical protein CD3158 [Clostridium difficile 630])
AAAAA
>959|CDS|1247039..1247296|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698783|ref|YP_001087680.1| hypothetical protein CD1187 [Clostridium difficile 630])
AAAG
>15|CDS|20307..21962|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697582|ref|YP_001086479.1| DNA polymerase III subunits gamma and tau [Clostridium difficile 630])
TAAA
>15|CDS|20307..21962|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697582|ref|YP_001086479.1| DNA polymerase III subunits gamma and tau [Clostridium difficile 630])
GAGTAA
>15|CDS|20307..21962|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697582|ref|YP_001086479.1| DNA polymerase III subunits gamma and tau [Clostridium difficile 630])
AGAGTA
>224|CDS|297753..298085|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697809|ref|YP_001086706.1| hypothetical protein CD0238 [Clostridium difficile 630])
TAATAA
>284|CDS|372479..373387|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126697878|ref|YP_001086775.1| hypothetical protein CD0306 [Clostridium difficile 630])
TGTACA
>494|CDS|644080..644352|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698181|ref|YP_001087078.1| hypothetical protein CD0603 [Clostridium difficile 630])
AATAGT
>498|CDS|652455..653789|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698188|ref|YP_001087085.1| two-component sensor histidine kinase [Clostridium difficile 630])
TATATT
>509|CDS|666111..667361|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698202|ref|YP_001087099.1| putative phage-related regulatory protein [Clostridium difficile 630])
GAATCC
>552|CDS|736145..736531|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698249|ref|YP_001087146.1| putative regulatory protein [Clostridium difficile 630])
GACGTA
>552|CDS|736145..736531|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698249|ref|YP_001087146.1| putative regulatory protein [Clostridium difficile 630])
AAAGAC
>552|CDS|736145..736531|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698249|ref|YP_001087146.1| putative regulatory protein [Clostridium difficile 630])
AGAGGA
>558|CDS|742665..743165|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698256|ref|YP_001087153.1| putative RNA polymerase sigma factor [Clostridium difficile 630])
ATA
>558|CDS|742665..743165|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698256|ref|YP_001087153.1| putative RNA polymerase sigma factor [Clostridium difficile 630])
GAGGTA
>564|CDS|755639..757045|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698263|ref|YP_001087160.1| putative ATP-dependent peptidase [Clostridium difficile 630])
AGGAAA
>672|CDS|897697..898620|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698377|ref|YP_001087274.1| putative hydroxymethylglutaryl-CoA lyase [Clostridium difficile 630])
TTGT
>672|CDS|897697..898620|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698377|ref|YP_001087274.1| putative hydroxymethylglutaryl-CoA lyase [Clostridium difficile 630])
TAATTG
>692|CDS|1008727..1009842|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698397|ref|YP_001087294.1| putative transposase-like protein B [Clostridium difficile 630])
AATAAC
>724|CDS|956155..957183|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698433|ref|YP_001087330.1| oligopeptide ABC transporter, permease protein [Clostridium difficile 630])
A
>724|CDS|956155..957183|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698433|ref|YP_001087330.1| oligopeptide ABC transporter, permease protein [Clostridium difficile 630])
AATA
>760|CDS|1004321..1005847|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698470|ref|YP_001087367.1| iron-dependent hydrogenase [Clostridium difficile 630])
TAGAAA
>821|CDS|1060646..1061125|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698596|ref|YP_001087493.1| hypothetical protein CD1012 [Clostridium difficile 630])
CGTAAA
>842|CDS|1095649..1097685|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698619|ref|YP_001087516.1| cell surface protein (putative N-acetylmuramoyl-L-alanine amidase) [Clostridium difficile 630])
A
>842|CDS|1095649..1097685|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698619|ref|YP_001087516.1| cell surface protein (putative N-acetylmuramoyl-L-alanine amidase) [Clostridium difficile 630])
GAAGAT
>843|CDS|1098180..1100210|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698620|ref|YP_001087517.1| cell surface protein (putative N-acetylmuramoyl-L-alanine amidase) [Clostridium difficile 630])
GAAGAT
>856|CDS|1124635..1125537|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698634|ref|YP_001087531.1| ABC transporter, ATP-binding protein [Clostridium difficile 630])
TCAATT
>877|CDS|1144992..1146443|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698657|ref|YP_001087554.1| putative aminotransferase [Clostridium difficile 630])
AAGCAA
>928|CDS|1210777..1211124|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698749|ref|YP_001087646.1| PadR-family transcriptional regulator [Clostridium difficile 630])
TTGGGA
>928|CDS|1210777..1211124|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698749|ref|YP_001087646.1| PadR-family transcriptional regulator [Clostridium difficile 630])
TTTTTG
>1053|CDS|1356951..1358690|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698886|ref|YP_001087783.1| metallo beta-lactamase superfamily protein [Clostridium difficile 630])
CTATCA
>1102|CDS|1414586..1415542|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126698939|ref|YP_001087836.1| putative galactose-1-phosphate uridylyltransferase [Clostridium difficile 630])
AAAATT
>1119|CDS|1431578..1432360|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698956|ref|YP_001087853.1| putative peptidyl-prolyl isomerase [Clostridium difficile 630])
GAT
>1119|CDS|1431578..1432360|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698956|ref|YP_001087853.1| putative peptidyl-prolyl isomerase [Clostridium difficile 630])
CGAT
>1119|CDS|1431578..1432360|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126698956|ref|YP_001087853.1| putative peptidyl-prolyl isomerase [Clostridium difficile 630])
CAACGA
>1178|CDS|1498718..1499314|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699018|ref|YP_001087915.1| hypothetical protein CD1415 [Clostridium difficile 630])
ATACAG
>1243|CDS|1585361..1586338|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699093|ref|YP_001087990.1| D-methionine ABC transporter, ATP-binding protein [Clostridium difficile 630])
AATGAT
>1243|CDS|1585361..1586338|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699093|ref|YP_001087990.1| D-methionine ABC transporter, ATP-binding protein [Clostridium difficile 630])
GGAAAT
>1254|CDS|453982..455097|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699104|ref|YP_001088001.1| transposase-like protein B [Clostridium difficile 630])
AATAAC
>1319|CDS|1739950..1740486|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699177|ref|YP_001088074.1| hypothetical protein CD1574 [Clostridium difficile 630])
TAATGT
>1335|CDS|1761615..1763306|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699195|ref|YP_001088092.1| potassium-transporting ATPase subunit A [Clostridium difficile 630])
TGGCAC
>1400|CDS|606336..607451|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699266|ref|YP_001088163.1| transposase-like protein B [Clostridium difficile 630])
AATAAC
>1457|CDS|867220..868335|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699326|ref|YP_001088223.1| transposase-like protein B [Clostridium difficile 630])
AATAAC
>1505|CDS|1963248..1964564|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699382|ref|YP_001088279.1| hypothetical protein CD1773 [Clostridium difficile 630])
AAC
>1505|CDS|1963248..1964564|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699382|ref|YP_001088279.1| hypothetical protein CD1773 [Clostridium difficile 630])
GAAGTT
>1524|CDS|1984261..1984644|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699402|ref|YP_001088299.1| hypothetical protein CD1793 [Clostridium difficile 630])
A
>1548|CDS|2010551..2011633|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699427|ref|YP_001088324.1| hypothetical protein CD1819 [Clostridium difficile 630])
CATTTT
>1550|CDS|986503..987618|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699429|ref|YP_001088326.1| transposase-like protein B [Clostridium difficile 630])
AATAAC
>1587|CDS|2056007..2056213|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699510|ref|YP_001088407.1| hypothetical protein CD1900 [Clostridium difficile 630])
ACTTGT
>1673|CDS|2160176..2160355|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699602|ref|YP_001088499.1| hypothetical protein CD1992A [Clostridium difficile 630])
TT
>1828|CDS|2362056..2365241|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699796|ref|YP_001088693.1| putative helicase [Clostridium difficile 630])
AATAGA
>1828|CDS|2362056..2365241|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699796|ref|YP_001088693.1| putative helicase [Clostridium difficile 630])
GATAAT
>1913|CDS|2479635..2480708|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699894|ref|YP_001088791.1| putative sugar dehydrogenase [Clostridium difficile 630])
CCTAGT
>1930|CDS|2498713..2498949|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699923|ref|YP_001088820.1| transposase (partial) [Clostridium difficile 630])
ATATC
>1930|CDS|2498713..2498949|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699923|ref|YP_001088820.1| transposase (partial) [Clostridium difficile 630])
AGAATT
>1967|CDS|2544463..2545332|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126699963|ref|YP_001088860.1| LysR family regulatory protein [Clostridium difficile 630])
TTCATA
>1976|CDS|2555498..2555986|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699973|ref|YP_001088870.1| putative glycine reductase complex component [Clostridium difficile 630])
CAAAGA
>1987|CDS|2568288..2569199|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699987|ref|YP_001088884.1| quinolinate synthetase [Clostridium difficile 630])
ATTAGC
>1987|CDS|2568288..2569199|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126699987|ref|YP_001088884.1| quinolinate synthetase [Clostridium difficile 630])
CAAATT
>2022|CDS|2620214..2620849|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700027|ref|YP_001088924.1| hypothetical protein CD2412 [Clostridium difficile 630])
TCTTAG
>2082|CDS|2688258..2688776|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700089|ref|YP_001088986.1| hypothetical protein CD2472 [Clostridium difficile 630])
TGATAA
>2082|CDS|2688258..2688776|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700089|ref|YP_001088986.1| hypothetical protein CD2472 [Clostridium difficile 630])
ATGATA
>2082|CDS|2688258..2688776|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700089|ref|YP_001088986.1| hypothetical protein CD2472 [Clostridium difficile 630])
AATGAT
>2201|CDS|2849271..2850110|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700228|ref|YP_001089125.1| hypothetical protein CD2614 [Clostridium difficile 630])
TTAATA
>2201|CDS|2849271..2850110|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700228|ref|YP_001089125.1| hypothetical protein CD2614 [Clostridium difficile 630])
ATCTTA
>2248|CDS|2913164..2914099|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700279|ref|YP_001089176.1| AraC family transcription regulator [Clostridium difficile 630])
GATGAA
>2257|CDS|2925505..2926680|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700290|ref|YP_001089187.1| putative acetyl-CoA acetyltransferase [Clostridium difficile 630])
TGGTTT
>2273|CDS|2944080..2945231|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700306|ref|YP_001089203.1| putative aminotransferase [Clostridium difficile 630])
AATTTT
>2276|CDS|2947186..2948193|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700309|ref|YP_001089206.1| asparagine synthetase AsnA [Clostridium difficile 630])
TA
>2375|CDS|3096359..3097789|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700414|ref|YP_001089311.1| cell surface protein [Clostridium difficile 630])
TAAAGA
>2388|CDS|3112871..3113773|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700429|ref|YP_001089326.1| tartronate semialdehyde reductase [Clostridium difficile 630])
AAAAAA
>2535|CDS|3314682..3315005|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700651|ref|YP_001089548.1| thioredoxin [Clostridium difficile 630])
CATATA
>2535|CDS|3314682..3315005|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700651|ref|YP_001089548.1| thioredoxin [Clostridium difficile 630])
TCATAT
>2542|CDS|3323650..3324450|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700658|ref|YP_001089555.1| hypothetical protein CD3040 [Clostridium difficile 630])
AGAAAT
>2632|CDS|3474352..3475311|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700761|ref|YP_001089658.1| putative transcriptional regulator [Clostridium difficile 630])
CATTAT
>2632|CDS|3474352..3475311|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700761|ref|YP_001089658.1| putative transcriptional regulator [Clostridium difficile 630])
TCATTA
>2654|CDS|3527110..3528453|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700790|ref|YP_001089687.1| enolase [Clostridium difficile 630])
AAAA
>2654|CDS|3527110..3528453|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700790|ref|YP_001089687.1| enolase [Clostridium difficile 630])
TCTATA
>2686|CDS|3583578..3584102|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700827|ref|YP_001089724.1| MarR family transcriptional regulator [Clostridium difficile 630])
TGGAAG
>2709|CDS|3611559..3612881|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700852|ref|YP_001089749.1| hypothetical protein CD3232 [Clostridium difficile 630])
GAC
>2796|CDS|3728764..3729846|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126700970|ref|YP_001089867.1| putative glycosyl transferase [Clostridium difficile 630])
TTTAAA
>2812|CDS|3750974..3751609|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700990|ref|YP_001089887.1| hypothetical protein CD3369 [Clostridium difficile 630])
ATATGG
>2812|CDS|3750974..3751609|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126700990|ref|YP_001089887.1| hypothetical protein CD3369 [Clostridium difficile 630])
ACAGTT
>2817|CDS|3760332..3761285|2|(gi|260681769|ref|NC_013315.1| hit from: gi|126701020|ref|YP_001089917.1| hypothetical protein CD3397 [Clostridium difficile 630])
A
>2870|CDS|3829597..3830319|1|(gi|260681769|ref|NC_013315.1| hit from: gi|126701075|ref|YP_001089972.1| GntR family transcriptional regulator [Clostridium difficile 630])
AGACAT
>X3201|ORF|395157..395228|1|(gi|260681769|ref|NC_013315.1|)
GTAGGA
>X3207|ORF|405215..406810|2|(gi|260681769|ref|NC_013315.1|)
TTAAAT
>X3304|ORF|646110..646778|1|(gi|260681769|ref|NC_013315.1|)
AAA
>X3504|ORF|1200554..1201216|1|(gi|260681769|ref|NC_013315.1|)
TGACTT
>X3576|ORF|1416550..1417122|2|(gi|260681769|ref|NC_013315.1|)
ACAAAT
>X3576|ORF|1416550..1417122|2|(gi|260681769|ref|NC_013315.1|)
AACAAA
>X3576|ORF|1416550..1417122|2|(gi|260681769|ref|NC_013315.1|)
GAAAAA
>X3576|ORF|1416550..1417122|2|(gi|260681769|ref|NC_013315.1|)
AAAGAA
>X3643|ORF|1555713..1556393|1|(gi|260681769|ref|NC_013315.1|)
GATGTA
>X3650|ORF|1570643..1571191|1|(gi|260681769|ref|NC_013315.1|)
TT
>X3730|ORF|1724432..1725001|1|(gi|260681769|ref|NC_013315.1|)
TGCTTG
>3735|ORF|1734937..1735476|1|(gi|260681769|ref|NC_013315.1|)
GATTAA
>X3784|ORF|1880039..1880491|2|(gi|260681769|ref|NC_013315.1|)
CATACA
>X3936|ORF|2206625..2207914|2|(gi|260681769|ref|NC_013315.1|)
AGAGAT
>X3971|ORF|2253222..2253464|2|(gi|260681769|ref|NC_013315.1|)
GGATAA
>X4286|ORF|2719492..2720805|2|(gi|260681769|ref|NC_013315.1|)
A
>X4286|ORF|2719492..2720805|2|(gi|260681769|ref|NC_013315.1|)
AAGAAT
>X4387|ORF|2869162..2870454|2|(gi|260681769|ref|NC_013315.1|)
TTAA
>X4518|ORF|3075963..3076667|2|(gi|260681769|ref|NC_013315.1|)
CATAA
>X4581|ORF|3177235..3177909|2|(gi|260681769|ref|NC_013315.1|)
TAGTGA
>X4651|ORF|3270552..3271478|2|(gi|260681769|ref|NC_013315.1|)
TTTATT
>4653|ORF|3272058..3273164|2|(gi|260681769|ref|NC_013315.1|)
ATAA
>X4663|ORF|3284025..3284873|2|(gi|260681769|ref|NC_013315.1|)
AATTCA
>X4793|ORF|3489582..3489914|2|(gi|260681769|ref|NC_013315.1|)
TCAAGT
>X4838|ORF|3556221..3557339|2|(gi|260681769|ref|NC_013315.1|)
CTTTGA
>X4838|ORF|3556221..3557339|2|(gi|260681769|ref|NC_013315.1|)
AACCTT
>X5233|ORF|4108315..4109019|2|(gi|260681769|ref|NC_013315.1|)
AGTAA
