Locus 993

Sequence ID X_DroMel_CAF1
Location 2,884,677 – 2,884,778
Length 101
Max. P 0.994243
window1606

overview

Window 6

Location 2,884,677 – 2,884,778
Length 101
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 96.70
Mean single sequence MFE -25.86
Consensus MFE -24.30
Energy contribution -24.18
Covariance contribution -0.12
Combinations/Pair 1.07
Mean z-score -1.83
Structure conservation index 0.94
SVM decision value 2.46
SVM RNA-class probability 0.994243
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2884677 101 - 22224390
AAAUUUUGGCUACGAAAAUGUUUUGUUGUCAAAUUUCCAC-CACGAGGCGACAAUCAAAUUUAUCCAUGGGUU---CUCGGGGUGUUUUUGAUGCCCCAUAAAAA
....((((((.(((((.....))))).)))))).......-...(.(((....((((((..(((((.(((...---.))))))))..))))))))).)....... ( -22.60)
>DroSec_CAF1 271648 102 - 1
AAAUUUUGGCAACGAAAAUGUUUUGUUGUCAAAUUUCCACCCACGAGGUGACAAUCAAAUUUAUCCAUGGGUU---CUCGGGGUGUUUUUGAUGCCCCAUAAAAA
....((((((((((((.....)))))))))))).....(((((.(.(((((.........)))))).))))).---...((((((((...))))))))....... ( -30.50)
>DroSim_CAF1 241119 102 - 1
AAAUUUUGGCUACGAAAAUGUUUUGUUGUCAAAUUUCCACCCACGAGGCGACAAUCAAAUUUAUCCAUGGGUU---CUCGGGGUGUUUUUGAUGCCCCAUAAAAA
....((((((.(((((.....))))).)))))).....(((((.(.(..((.........))..)).))))).---...((((((((...))))))))....... ( -23.10)
>DroEre_CAF1 295094 104 - 1
AAAUUUUGGCUACGAAAAUGUUUUGUUGUCAAAUUUCCAC-CACGAGGCGACAAUCAAAUUCAUCCAUGGGUUCGUCUCGGGGUGUUUUUGAUGCCCCAUAAAAA
....((((((.(((((.....))))).)))))).......-...(((((((...(((..........)))..)))))))((((((((...))))))))....... ( -28.30)
>DroYak_CAF1 279860 100 - 1
AAAU-UUGGCUACGAAAAUGUUUUGUUGUCAAAUUUCCAC-CACGAGGCGACAAUCAAAUUUAUCCAUGGGUU---CUCGGGGUGUUUUUGAUGCCCCAUAAAAA
((((-(((((.(((((.....))))).)))))))))....-...(.(((....((((((..(((((.(((...---.))))))))..))))))))).)....... ( -24.80)
>consensus
AAAUUUUGGCUACGAAAAUGUUUUGUUGUCAAAUUUCCAC_CACGAGGCGACAAUCAAAUUUAUCCAUGGGUU___CUCGGGGUGUUUUUGAUGCCCCAUAAAAA
....((((((.(((((.....))))).))))))...........(.(((....((((((..(((((.((((.....)))))))))..))))))))).)....... (-24.30 = -24.18 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:52 2006