Locus 990

Sequence ID X_DroMel_CAF1
Location 2,872,595 – 2,872,697
Length 102
Max. P 0.851855
window1602

overview

Window 2

Location 2,872,595 – 2,872,697
Length 102
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.99
Mean single sequence MFE -31.29
Consensus MFE -18.94
Energy contribution -18.67
Covariance contribution -0.28
Combinations/Pair 1.19
Mean z-score -1.98
Structure conservation index 0.61
SVM decision value 0.79
SVM RNA-class probability 0.851855
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2872595 102 - 22224390
--AAAAAAUGAAAU---GAAGGAGCGUGCGUGAGCAUCGUCAGCCGGGCUUCAUUUUCCAUCUUCCUGACAGGUGCUGCUGCAUGGAUUUUCC-CCUGCUCCU------------CGUUU
--........((((---((.((((((((((..(((((((((((..(((............)))..))))).))))))..)))))((.....))-...))))))------------))))) ( -33.50)
>DroPse_CAF1 359510 101 - 1
---AAAAGCAGAUUGGAGCAGAAGCGUGCGUGAGCAUCGUCAGCUCUGGUUCAUCUUCCAUCCUCUUGACAGGUUC---UGCAUGAAUUUGCUCCCAACUCCU------------C-UUU
---...((((((((.(.((((((.(((((....)))).(((((...(((........))).....))))).).)))---))).).))))))))..........------------.-... ( -32.20)
>DroEre_CAF1 282714 99 - 1
--AAAAAAUGAAAU---GAAGGAGCGUGCGUGAGCAUCGUCAGCCGGGCUUCAUUUUCCAUCUUCCUGACAGGUGC---UGCAUGGAUUUUCC-CCUGCUCCU------------CGUUU
--........((((---((.(((((((((...(((((((((((..(((............)))..))))).)))))---)))))((.....))-...))))))------------))))) ( -30.80)
>DroYak_CAF1 267456 99 - 1
--AAAAAAUGAAAU---GAAGGAGCGUGCGUGAGCAUCGUCAGCCGGGCUUCAUUUUCCAUCUUCCUGGCAGGUGC---UGCAUGGAUUUUCC-CCUGCUCCU------------CGUUU
--........((((---((.(((((((((...((((((....((((((................)))))).)))))---)))))((.....))-...))))))------------))))) ( -33.09)
>DroAna_CAF1 411098 113 - 1
AGAAAAAAUCAAGA---GAAAAAGCGUGCGUGAGCAUCGUCAGUCCGGCUUCAUUUUCCAUCUUCCUGACAGGUGC---UGCAUGAAUCUGCU-CCUUCUCCUUCUCCUUUUUAUUGUUU
............((---(((..((((..(((((((((((((((......................))))).)))))---).))))....))))-..)))))................... ( -25.95)
>DroPer_CAF1 379541 101 - 1
---AAAAGCAGAUUGGAGCAGAAGCGUGCGUGAGCAUCGUCAGCUCUGGUUCAUCUUCCAUCCUCUUGACAGGUUC---UGCAUGAAUUUGCUCCCAACUCCU------------C-UUU
---...((((((((.(.((((((.(((((....)))).(((((...(((........))).....))))).).)))---))).).))))))))..........------------.-... ( -32.20)
>consensus
__AAAAAAUGAAAU___GAAGAAGCGUGCGUGAGCAUCGUCAGCCCGGCUUCAUUUUCCAUCUUCCUGACAGGUGC___UGCAUGAAUUUGCC_CCUGCUCCU____________CGUUU
.................(((((..((((((...((((((((((......................))))).)))))...))))))..)))))............................ (-18.94 = -18.67 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:48 2006