| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 388,006 – 388,107 |
| Length | 101 |
| Max. P | 0.664099 |
| Location | 388,006 – 388,107 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 69.58 |
| Mean single sequence MFE | -24.93 |
| Consensus MFE | -13.46 |
| Energy contribution | -13.13 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.664099 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 388006 101 + 22224390 AGCGAGUGGGUAUGACAGGACAG------AUAGCAGCGAGUACUCUCGUAGCUUUGCCUUAUUUUUCUUUUCUUCCUUUU-CCUUCAAUUCCCUU-------AUCCGCCCCCGCC .(((.((((((((((.(((((((------..(((.(((((....))))).)))))).......................)-)))))).......)-------))))))...))). ( -21.61) >DroSec_CAF1 21870 102 + 1 AGCGAGUGGGUACGAGAGGACAG------AUAACAGCGAGUUCUCUCGUAGCUUUGCCUUAUUUUUCAUUUCUUCUUUUCCCCUUCAAUUCCCUU-------CUCCGCCCCCGCC .(((.(.((((((((((((((..------..........)))))))))).((...))......................................-------....)))))))). ( -23.30) >DroYak_CAF1 22794 102 + 1 AGCGAGUGGGUACGACAGGACAGAUAUAGAUAGCAGCGAGUGCUCUCGUUGCUUUCCCUCC-UUUUCCUUCCAU----UCCC--------CCCCGCUACCCCCGCCCAUUCCACU ((((.(.(((...((.((((........((.(((((((((....))))))))).)).....-...))))))...----.)))--------.).)))).................. ( -29.89) >consensus AGCGAGUGGGUACGACAGGACAG______AUAGCAGCGAGUACUCUCGUAGCUUUGCCUUAUUUUUCAUUUCUUC_UUUCCCCUUCAAUUCCCUU_______CUCCGCCCCCGCC .....(((((..(....).............(((.(((((....))))).)))........................................................))))). (-13.46 = -13.13 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:16 2006