Locus 988

Sequence ID X_DroMel_CAF1
Location 2,858,848 – 2,858,958
Length 110
Max. P 0.727463
window1598

overview

Window 8

Location 2,858,848 – 2,858,958
Length 110
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 88.50
Mean single sequence MFE -28.38
Consensus MFE -20.06
Energy contribution -19.90
Covariance contribution -0.16
Combinations/Pair 1.22
Mean z-score -2.12
Structure conservation index 0.71
SVM decision value 0.42
SVM RNA-class probability 0.727463
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2858848 110 + 22224390
AA-AAAUAAUGCCUUUGGCCCAAAAUUUUACGAAGCUCGAUUUAUGGCCCGAUUUCGCAAGAUCGAAACGGAGAAAGGUCG-AAAAAGUUGGCGAAAGGAAUUGGUUUUGUU
.(-((((....(((((.(((.((..((((.(((.(((........)))(((.(((((......)))))))).......)))-))))..))))).))))).....)))))... ( -25.90)
>DroSec_CAF1 246293 108 + 1
AA-AAAUAAUGCCUUUGGCCGAAA--UUUACGAGGCGAGAUUUAUGGCCCGAUUUUGCAAGAUCGUAACGGAGAAAGGUCG-AAAAAGUUGGCGAAAGGAAUCAUUUUUGUU
((-((((.((.(((((.(((((..--.((((((.((((((((........))))))))....))))))(((.......)))-......))))).))))).)).))))))... ( -29.10)
>DroSim_CAF1 216226 109 + 1
AA-AAAUAAUGCCUUUGGCCGAAA--UUUACGAGGCGAGAUUUAUGGCCCGAUUUUGCAAGAUCGAAACGGAGAAAGGUCGGAAAAAUUUGGCGAAAGGAAUCAGUUUUGUU
.(-((((....(((((.((((((.--(((.((((((.(......).)))((((((....)))))).............)))..))).)))))).))))).....)))))... ( -27.90)
>DroEre_CAF1 267425 108 + 1
AA-AAAUAAUGCCUUUGGCCGAAA--UUCACGAAGCGAGAUUUAUGGCUCGAUUUGGCAAGAUCUGAGCGGAGAAAGGCCG-GAAAAGUUGGCGAAAGGAAUGAGUUUGGUU
..-........(((((.(((((..--(((.(((.((.(......).)))))...((((....(((....))).....))))-)))...))))).)))))............. ( -28.80)
>DroYak_CAF1 254059 109 + 1
AAAAAAUAAAGCCUUUGGCCGAAA--UUCACGAAUCGAGAUUUAUGGCUCGAUUUGGCAAGAUCAGAACGGAGAAAGGUCG-GAAAAGUUGGCGAAAGGAAUAAGCUUGAUU
...........(((((.(((((..--(((.(((((((((........)))))))))....((((............)))).-)))...))))).)))))............. ( -30.20)
>consensus
AA_AAAUAAUGCCUUUGGCCGAAA__UUUACGAAGCGAGAUUUAUGGCCCGAUUUGGCAAGAUCGAAACGGAGAAAGGUCG_AAAAAGUUGGCGAAAGGAAUCAGUUUUGUU
...........(((((.(((((....(((.(((.((.(......).))(((.(((((......)))))))).......))).)))...))))).)))))............. (-20.06 = -19.90 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:45 2006