| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,854,108 – 2,854,204 |
| Length | 96 |
| Max. P | 0.904805 |
| Location | 2,854,108 – 2,854,204 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 79.97 |
| Mean single sequence MFE | -26.20 |
| Consensus MFE | -17.06 |
| Energy contribution | -18.33 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.65 |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.904805 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2854108 96 - 22224390 --GGCCAUCAAAGAGCAGAAAGCAAAAAGCAAAAAGCAAAAAGCAGGAGCUGCAGCCAAAUCUUCGGUUGCAUUUCCUGUCCCACAAUGGGAAAGUGC---- --.(((......).)).....((.....)).....(((.....((((((.(((((((........))))))).))))))((((.....))))...)))---- ( -28.70) >DroPse_CAF1 335108 85 - 1 CAGGCUAUCAAAGAGCAGGGGCCG----------------GAGC-GGAGAUGGAGCCAAAUCUUCAGUUGCAUUUCCUGUCCAACAAUGGGAAAGUGCCAGC ..(((.........(((((((..(----------------.(((-((((((........)))))).))).)..)))))))(((....)))......)))... ( -23.40) >DroSec_CAF1 241677 89 - 1 --GGCCAUCAAAGAGCUGAAAGCAAAAA-------GCAAAAAGCAGGAGCUGCAGCCAAAUCUUCGGUUGCAUUUCCUGUCCCACAAUGGGAAAGUGC---- --.((..(((......)))..)).....-------(((.....((((((.(((((((........))))))).))))))((((.....))))...)))---- ( -29.60) >DroEre_CAF1 262674 82 - 1 --GGCCAUCAAAGAACAGAAUGC--------------AAAAAGCAGGAGCUGCUGCCAAAUCUUCGGUUGCAUUUCCUGUCCCACAAUGGGAAAGUGC---- --...................((--------------(.....((((((.(((.(((........))).))).))))))((((.....))))...)))---- ( -22.80) >DroYak_CAF1 249627 82 - 1 --GGCCAUCAAAGAACAGAAAGC--------------AAAAAGCAGGAGCUGCAGCCAAAUCUUCGGUUGCAUUUCCUGUCCCACAAUGGGAAAGUGC---- --...................((--------------(.....((((((.(((((((........))))))).))))))((((.....))))...)))---- ( -26.80) >DroPer_CAF1 355128 85 - 1 CAGGCUAUCAAAGAGCAGGGGACG----------------GAGC-GGAGAUGGAGCCAAAUCUUCAGUUGCAUUUCCUGUCCAACAAUGGGAAAGUGCCAGC ..(((.........(((((..(.(----------------.(((-((((((........)))))).))).).)..)))))(((....)))......)))... ( -25.90) >consensus __GGCCAUCAAAGAGCAGAAAGC______________AAAAAGCAGGAGCUGCAGCCAAAUCUUCGGUUGCAUUUCCUGUCCCACAAUGGGAAAGUGC____ ..............((...........................((((((.(((((((........))))))).))))))((((.....))))..))...... (-17.06 = -18.33 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:40 2006