Locus 984

Sequence ID X_DroMel_CAF1
Location 2,851,408 – 2,851,511
Length 103
Max. P 0.546397
window1592

overview

Window 2

Location 2,851,408 – 2,851,511
Length 103
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 85.20
Mean single sequence MFE -27.30
Consensus MFE -18.48
Energy contribution -19.92
Covariance contribution 1.44
Combinations/Pair 1.08
Mean z-score -1.73
Structure conservation index 0.68
SVM decision value 0.03
SVM RNA-class probability 0.546397
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2851408 103 + 22224390
CUGUUAACUCUGGGGCAUAAUAACUUUAUUAGGAAGUUCGUCUUGAACUUGCAGCA--GCCGCCGCAAUUGGGGGCAAAUUUAAGUGCCCCCACCCCCCCUCACC
...........((((..(((((....)))))((((((((.....))))))((.((.--...)).))...((((((((........)))))))))).))))..... ( -32.30)
>DroSec_CAF1 239035 90 + 1
CUGUUAACUCUGGGGCAUAAUAACUUUAUUAGGAAGUUCGUCUUGAACUUGCAGCA--GCCGCCGCAAUUGGGGGCAAAUUUAAGUGACCCC-------------
...........(((((((.............(.((((((.....)))))).)....--(((.(((....))).)))........))).))))------------- ( -25.40)
>DroEre_CAF1 259918 93 + 1
CUGUUAACUCUGGGGCAUAAUAACUUUAUUAGGAAGUUCGUCUUCAACUUGCAGCA--GCCGCCGCAAUUGGGGGCAAAUUUAAGUGCCCCCCUC----------
...........(((((((...((((((.....)))))).((((((((.((((.((.--...)).))))))))))))........)))))))....---------- ( -31.40)
>DroYak_CAF1 246874 89 + 1
CUGUUAACUCCG-GGCAUAAUAACUUUAUUAGGAAGUUCGUCUUGAAGUUGCAGCA--GCCGCCUCAAUUGAGGGCAAAUUUAAGUGCCCCC-------------
...........(-(((((..((((((((..(.(.....).)..)))))))).....--(((..(((....))))))........))))))..------------- ( -22.80)
>DroAna_CAF1 385445 91 + 1
CUGUUAACU-UGGCGCUUAAUAACUUUAUUAGGAAGUUGGUCGUGA--UGGCAUCAUUGCCGCCGCAAUUGAGGGCAAAUUUAAGUGCUUCCAG-----------
.........-.((((((((((((((((.....)))))))...(((.--(((((....))))).)))..............))))))))).....----------- ( -24.60)
>consensus
CUGUUAACUCUGGGGCAUAAUAACUUUAUUAGGAAGUUCGUCUUGAACUUGCAGCA__GCCGCCGCAAUUGGGGGCAAAUUUAAGUGCCCCC_____________
...........(((((((...((((((.....)))))).(((((.((.((((.((......)).)))))).)))))........))))))).............. (-18.48 = -19.92 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:40 2006