| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,832,625 – 2,832,717 |
| Length | 92 |
| Max. P | 0.654330 |
| Location | 2,832,625 – 2,832,717 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 86.78 |
| Mean single sequence MFE | -25.17 |
| Consensus MFE | -20.72 |
| Energy contribution | -20.50 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.654330 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2832625 92 - 22224390 GCAG-AGGA--GGGUGCAGGUCGCGUCGUUGAAAUUAAAAAUAAAUUUCACAGUAAACACACAUAAAAAGAGACGCUGGCAU---UGGACU---CUGUACU ((((-((..--.(((((.....(((((((.((((((.......)))))))).((......)).........)))))..))))---)...))---))))... ( -24.60) >DroPse_CAF1 303944 96 - 1 UACCGGGGAGGGGGAGCAG--CGCGUCGUCGAAAUUAAAAAUAAAUUUCACAGUAAACACACAUAAAAAGAGACGCUGCCAUGGAUGGGCU---CUGGUCC ..((.....)).(((.(((--.(((((.((((((((.......))))))...((......)).......))))))).(((.......))).---))).))) ( -23.60) >DroSec_CAF1 220783 90 - 1 GAAGG---A--GGGUGCAGGUCGCGUCGUUGAAAUUAAAAAUAAAUUUCACAGUAAACACACAUAAAAAGAGACGCUGGCAU---UGGCCU---CUGUACC .....---.--.((((((((..(((((((.((((((.......)))))))).((......)).........))))).(((..---..))))---))))))) ( -25.50) >DroSim_CAF1 193354 93 - 1 GAAGGAGGA--GGGUGCAGUUCGCGUCGUUGAAAUUAAAAAUAAAUUUCACAGUAAACACACAUAAAAAGAGACGCUGGCAU---UGGCCU---CUGUACC ...(((((.--.(((((.....(((((((.((((((.......)))))))).((......)).........)))))..))))---)..)))---))..... ( -25.10) >DroEre_CAF1 241106 95 - 1 GAAG-AGGA--GGGUGCAGGUCGCGUCGUUGAAAUUAAAAAUAAAUUUCACAGUAAACACACAUAAAAAGAGACGCUGCCAU---UGGCCUCUUCUGUACU ..((-((((--((.((..(((.(((((((.((((((.......)))))))).((......)).........))))).)))..---)).))))))))..... ( -28.60) >DroPer_CAF1 325556 96 - 1 UACCGGGGAGGGGGAGCAG--CGCGUCGUCGAAAUUAAAAAUAAAUUUCACAGUAAACACACAUAAAAAGAGACGCUGCCAUGGAUGGGCU---CUGGUCC ..((.....)).(((.(((--.(((((.((((((((.......))))))...((......)).......))))))).(((.......))).---))).))) ( -23.60) >consensus GAAGGAGGA__GGGUGCAGGUCGCGUCGUUGAAAUUAAAAAUAAAUUUCACAGUAAACACACAUAAAAAGAGACGCUGCCAU___UGGCCU___CUGUACC ............(((((((...(((((((.((((((.......)))))))).((......)).........))))).(((.......)))....))))))) (-20.72 = -20.50 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:34 2006