| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,825,694 – 2,825,793 |
| Length | 99 |
| Max. P | 0.519882 |
| Location | 2,825,694 – 2,825,793 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 77.37 |
| Mean single sequence MFE | -17.88 |
| Consensus MFE | -11.35 |
| Energy contribution | -11.35 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.63 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.519882 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2825694 99 - 22224390 ACAAUAUCCUUUUCGUGUUAUUACAAGUGUACGUCCUUGUCGCCAGCUUUGUCAGA-AUGUCUGGCAACGCUACUUGUGCAC-A-UUUC-CAUCCC-GCCCUUC------- ..............((((....(((((((((((....))).)).(((.(((((((.-....))))))).)))))))))))))-.-....-......-.......------- ( -21.70) >DroVir_CAF1 316499 97 - 1 ACAAUAUCCUUUUUAUGUUAUUACAAGUGUACGUCCUUGUCGCCAGCUUUGUCAAA-AUGUCUGGCAACGCUUCAG-------U-GUUUUUUUUUU-UGUAUAUUUU---- ........................(((((((((........(((((((((....))-).).)))))(((((....)-------)-)))........-))))))))).---- ( -17.20) >DroEre_CAF1 233773 99 - 1 ACAAUAUCCUUUUCGUGUUAUUACAAGUGUACGUCCUUGUCGCCAGCUUUGUCAGA-AUGUCUGGCAACGCUACUUGUGCAC-A--UUU-CCUCCCCCGAAACU------- ..........((((((((....))).(((((((.....((....(((.(((((((.-....))))))).))))).)))))))-.--...-.......)))))..------- ( -22.80) >DroWil_CAF1 330043 97 - 1 ACAAUAUCCUUUUUAUGUUAUUACAAGUGUAUGUCCUUGUCGCCAGCUUUGUCAAA-AUGUCUGGCAACGCUUCU---GUACAA-UUUU-UUUCCC-ACCACUC------- ...............(((....)))..(((((.....(((.(((((((((....))-).).))))).))).....---))))).-....-......-.......------- ( -12.60) >DroMoj_CAF1 384915 108 - 1 ACAAUAUCCUUUUUAUGUUAUUACAAGUGUACGUCCUUGUCGCCAGCUUUGUCAAA-AUGUCUGGCAACGCUUCUGCUACGCUU-CUUUUCUUCCU-UGUUUUUUUUUUUC ........................(((((((.......((.(((((((((....))-).).))))).))((....)))))))))-...........-.............. ( -16.30) >DroAna_CAF1 346979 89 - 1 ACAAUAUCCUUUUCGUGUUAUUACAAGUGUACGUCCUUGUCGCCAGCUUUGUCAGAAAUGUCUGGCAACGCUUC---UGCUC-AGUCUC-CCUC----------------- ......................(((((........))))).((.(((.((((((((....)))))))).)))..---.))..-......-....----------------- ( -16.70) >consensus ACAAUAUCCUUUUCAUGUUAUUACAAGUGUACGUCCUUGUCGCCAGCUUUGUCAAA_AUGUCUGGCAACGCUUCU__UGCAC_A_UUUU_CUUCCC_UGCAUUU_______ ......................(((((........)))))....(((.((((((........)))))).)))....................................... (-11.35 = -11.35 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:31 2006