Locus 975

Sequence ID X_DroMel_CAF1
Location 2,811,501 – 2,811,593
Length 92
Max. P 0.994357
window1577

overview

Window 7

Location 2,811,501 – 2,811,593
Length 92
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 72.97
Mean single sequence MFE -19.98
Consensus MFE -12.94
Energy contribution -12.82
Covariance contribution -0.12
Combinations/Pair 1.19
Mean z-score -2.24
Structure conservation index 0.65
SVM decision value 2.47
SVM RNA-class probability 0.994357
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2811501 92 - 22224390
CCGAAUAUAUCAGAAUAAAAUACAACA--------------UA--------------ACGUAAAUUGUUGACAUUUGUGAAUUUCCAUAAGUCAAUAAUAUAGCUUUGGGCAUCACACUU
(((((...............(((....--------------..--------------..))).(((((((((..(((((......)))))))))))))).....)))))........... ( -14.50)
>DroSec_CAF1 200000 98 - 1
CCGAAA-AAUCAAAAUAAAAUACAACA--------------UAUAUUUGU-------ACGUAAGUUGUUGACAUUUGUGAAUUUCCAUAAAUCAACAAUAUAGCUUUGGGCAUCACUCUU
(((((.-.............(((((..--------------.....))))-------).....((((((((..((((((......)))))))))))))).....)))))........... ( -16.20)
>DroSim_CAF1 171997 74 - 1
CCGAAA-AAUCAAAAUAAA---------------------------------------------UUGUUGACAUUUGUGAAUUUCCAUAAGUCAACAAUAUAGCUUUGGGCAUCACUCUU
..((..-..(((((.((.(---------------------------------------------((((((((..(((((......)))))))))))))).))..)))))...))...... ( -16.40)
>DroEre_CAF1 219213 119 - 1
CCGAAA-AUGGAAAGUAAAAUACAACAUAUGUACGUGUGUGUAUAUUUAUACACCGAACGUAAAUUGUUGACAUUUGUGAAUUUCCAUAAGUCAACAGUGUAGCUUUGGGCAGCACACUU
..((..-(((((((...((((.((((((((((.((.(((((((....))))))))).)))))...)))))..)))).....)))))))...))....((((.((.....)).)))).... ( -33.00)
>DroYak_CAF1 206433 105 - 1
CCGAAA-AUUAAAAGUAAAACACAAC--------------GUAUAUUUAUACAGCCAACGUAAAUUGUUGACAUUUGUGAAUUUCCAUAAGUCAACAGUAUAGCUUUGGGCAUCACACUC
..((..-...................--------------((((....)))).(((...((..(((((((((..(((((......))))))))))))))...))....))).))...... ( -19.80)
>consensus
CCGAAA_AAUCAAAAUAAAAUACAACA______________UAUAUUU_U_______ACGUAAAUUGUUGACAUUUGUGAAUUUCCAUAAGUCAACAAUAUAGCUUUGGGCAUCACACUU
...............................................................(((((((((..(((((......))))))))))))))...((.....))......... (-12.94 = -12.82 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:26 2006