Locus 974

Sequence ID X_DroMel_CAF1
Location 2,810,302 – 2,810,398
Length 96
Max. P 0.771129
window1576

overview

Window 6

Location 2,810,302 – 2,810,398
Length 96
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 93.75
Mean single sequence MFE -33.87
Consensus MFE -33.39
Energy contribution -32.07
Covariance contribution -1.32
Combinations/Pair 1.21
Mean z-score -1.58
Structure conservation index 0.99
SVM decision value 0.53
SVM RNA-class probability 0.771129
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2810302 96 + 22224390
GGUGGCUCUGUUGCUGCUGCUGCUGUAGUUGCAAUUGGUUCUGAUGGUUGUUCUGCAUAAUGGUCGAGCUGCCAUUGGAUUUCGUCGAACAGGUGG
..((((((.(((((.(((((....))))).))))).)).((..(((((.((((.((......)).)))).)))))..))....))))......... ( -31.60)
>DroSec_CAF1 198768 96 + 1
GGUGGCUCUGUUGCUGCUGCUGCUGUAGUUGCAACUGGUUCUGGUGGUUGUUCUGCAGAAUGGUCGAACUGCCGUUGGACUUCGUCGAGCAGGUGG
....((((.(((((.(((((....))))).))))).((.(((..((((.((((.((......)).)))).))))..)))..))...))))...... ( -34.80)
>DroYak_CAF1 205207 96 + 1
GGUGGCUCUGUUGCUGCUGCUGCUGCAGUUGCAAUUGAUUCUGGUGGUUGUUCUGCAGAAUGGUCGAGCUGCCAUUGGACUUCGUCGAACAGGUGG
....((.(((((((.(((((....))))).))).(((((((..(((((.((((.((......)).)))).)))))..))....))))))))))).. ( -35.20)
>consensus
GGUGGCUCUGUUGCUGCUGCUGCUGUAGUUGCAAUUGGUUCUGGUGGUUGUUCUGCAGAAUGGUCGAGCUGCCAUUGGACUUCGUCGAACAGGUGG
..((((((.(((((.(((((....))))).))))).)).((..(((((.((((.((......)).)))).)))))..))....))))......... (-33.39 = -32.07 +  -1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:25 2006