Locus 971

Sequence ID X_DroMel_CAF1
Location 2,779,237 – 2,779,327
Length 90
Max. P 0.852739
window1573

overview

Window 3

Location 2,779,237 – 2,779,327
Length 90
Sequences 6
Columns 90
Reading direction forward
Mean pairwise identity 77.19
Mean single sequence MFE -37.65
Consensus MFE -21.14
Energy contribution -22.67
Covariance contribution 1.53
Combinations/Pair 1.26
Mean z-score -1.95
Structure conservation index 0.56
SVM decision value 0.80
SVM RNA-class probability 0.852739
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2779237 90 + 22224390
GCAGUGCCACCGCCACCGCUGGGAAUGGACAGUCGGCCAAUGCGAAUUCGAACGCGAAUGCGGGCGGAGGUGUAGGUGGUGCGGGCGCAG
...(((((..(((((((((((........)))).......((((..((((..(((....)))..))))..)))))))))))..))))).. ( -42.20)
>DroGri_CAF1 246769 90 + 1
GCAGUGCCAGCGCGACCAGCACCAAUGGACAGUCGGCAAAUGCGAAUGCCAAUGCCAGCGCCGGUGGAAACUCUAACGGUGCAGACGCAG
((.((.((((.((.....)).)...))))).(((((((...((....))...)))).((((((.(((.....))).)))))).))))).. ( -31.50)
>DroSec_CAF1 167362 90 + 1
GCAGUGCCACCGCCACCGCCGGCAAUGGACAGUCGGCCAAUGCGAAUGCGAACGCGAAUGCGGGCGGAGGACCAGGUGGUGCGGGCGCAG
...(((((..(((((((((((((........))))))...((....(.((..(((....)))..)).)....)))))))))..))))).. ( -42.70)
>DroEre_CAF1 184420 90 + 1
GCAGCGCCACCGCCACCGCCCAGAAUGGACAGUCGGCCAAUGCGAAUGCGAACGCGAAUGCGGGCGGAGGAGCAGGUGGUGCGGGUGCAG
(((((((((((.((.((((((....(((........)))..(((..(((....)))..))))))))).))....))))))))...))).. ( -43.20)
>DroWil_CAF1 265600 77 + 1
GCAGCGCAACUGCCACAAGCGAAAAUGGCCAAUCGGCUAAUGCCAAUGCCAAUGCCAAUGCGGGUGG---UGCUGGUGGU----------
.((((((..((((.....(((....((((..((.(((....))).)))))).)))....))))...)---))))).....---------- ( -25.60)
>DroYak_CAF1 178630 90 + 1
GCAGCGCCACUGCCACCGCCCAGAAUGGACAAUCGGCCAAUGCGAAUGCGAACGCGAAUGCGGGCGGAGGACCAGGUGGUGCGGGAGCAG
((.((((((((.((.((((((....(((........)))..(((..(((....)))..))))))))).))....))))))))....)).. ( -40.70)
>consensus
GCAGCGCCACCGCCACCGCCGAGAAUGGACAGUCGGCCAAUGCGAAUGCGAACGCGAAUGCGGGCGGAGGAGCAGGUGGUGCGGGCGCAG
...((((((((.((.(((((.....(((........)))..(((...((....))...))).))))).))....))))))))........ (-21.14 = -22.67 +   1.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:22 2006