Locus 967

Sequence ID X_DroMel_CAF1
Location 2,759,364 – 2,759,454
Length 90
Max. P 0.961490
window1568

overview

Window 8

Location 2,759,364 – 2,759,454
Length 90
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 79.89
Mean single sequence MFE -32.62
Consensus MFE -20.32
Energy contribution -21.64
Covariance contribution 1.32
Combinations/Pair 1.09
Mean z-score -2.39
Structure conservation index 0.62
SVM decision value 1.53
SVM RNA-class probability 0.961490
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2759364 90 + 22224390
GUGGGCGUUGCGUCCGCCCUGCAUG---------CCCCCACGAAGAAUCUCAGUGUCUCAGCAUGUGUAUUUGCACUUGGCAACUUAACGCUGAGGUUU
(((((.((((((.......)))).)---------).)))))...((((((((((((....((..((((....))))...))......)))))))))))) ( -32.80)
>DroSec_CAF1 147391 90 + 1
GUGGGCGUUGCGUCCGCCCUCCAUG---------CCCCCACAAAGAAUCUCAGUGUCUCAGCAUGUGUAUUUGCACUUGGCAACUUAACGCUGAGGUUU
(((((.(..((((.........)))---------)))))))...((((((((((((....((..((((....))))...))......)))))))))))) ( -29.30)
>DroEre_CAF1 164020 79 + 1
GUGGGCGUGC-----------CAUG---------CCCCCACCAAGAAUCUCAGUGUCUCAGCAUGUGUAUUUGCACUUGGCAACUUAGCGCUGAGGUUU
(((((.((..-----------...)---------).)))))...((((((((((((....((..((((....))))...))......)))))))))))) ( -29.20)
>DroYak_CAF1 157912 90 + 1
GUGGGCGUGGCGUGCGCCCUGCAUG---------CCCCCACCAAGAAUCUCAGUGUCUCAGCAUGUGUAUUUGCACUUGGCAACUUAACGCUGAGGUUU
(((((...(((((((.....)))))---------)))))))...((((((((((((....((..((((....))))...))......)))))))))))) ( -39.10)
>DroAna_CAF1 251623 91 + 1
GGGGGCGUGGCAAGGACUCC-CACUCCCCCUCUUCCCCCUCG-------UGUAGGUCUCAGCAUGUGUAUUUGCACUUGGCAACUUAACGCUGAGGUUU
(((((.((((.........)-))).))))).......(((((-------(((((((....((..((((....))))...)).)))).)))).))))... ( -32.70)
>consensus
GUGGGCGUGGCGUCCGCCCU_CAUG_________CCCCCACCAAGAAUCUCAGUGUCUCAGCAUGUGUAUUUGCACUUGGCAACUUAACGCUGAGGUUU
(((((...............................)))))...((((((((((((....((..((((....))))...))......)))))))))))) (-20.32 = -21.64 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:18 2006