Locus 966

Sequence ID X_DroMel_CAF1
Location 2,754,900 – 2,754,991
Length 91
Max. P 0.747295
window1567

overview

Window 7

Location 2,754,900 – 2,754,991
Length 91
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 72.83
Mean single sequence MFE -15.73
Consensus MFE -1.73
Energy contribution -1.85
Covariance contribution 0.12
Combinations/Pair 1.43
Mean z-score -1.63
Structure conservation index 0.11
SVM decision value 0.47
SVM RNA-class probability 0.747295
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2754900 91 + 22224390
GGUAAUACCCU-CUAUGCAUAGAGGCUAUAAUGAGGAGAGAAAACAUACAAAAAGUGAAAA--AAAAACUUGUUUCACCCCACCCACCACCACC
(((.(((.(((-(((....)))))).)))..((.((.((((...........((((.....--....)))).)))).)).))...)))...... ( -15.40)
>DroPse_CAF1 212000 74 + 1
CUGCAUACCCCAGGGUGUGUGAAGGGUAUAAUGAGGAGAGAAAACAUAUAACAAGUGAAA-----AAGCUUGUUCU-C--------------UC
..(((((((....)))))))...............((((((.........((((((....-----..)))))))))-)--------------)) ( -21.00)
>DroSec_CAF1 142991 80 + 1
UGGAAUACCCU-CUAUGCAUUGAGGCUAUAAUGAGGAGAGAAAACAUACAAAAAGUGAAA-----AAACUUGUUCCGCCCCAC--------AAC
.(((((...((-((...(((((......)))))...))))............((((....-----..))))))))).......--------... ( -14.20)
>DroEre_CAF1 159539 83 + 1
UUGCAUACCCU-UUAUGCAUAGAGGCUAUAAUGAGGAGAGAAAACAUAGAAAAAGUGAAAAAAAAAAACUCGUUUGGCCC------G----UUC
.((((((....-.))))))..(.(((((.((((((.........(((.......)))...........))))))))))))------.----... ( -16.35)
>DroYak_CAF1 153470 84 + 1
UUGAAUACCCU-GUAUUCAUAGCGUCUAUAAUGAGGAGAGAAAACACACAAAAAGUGAAA-----AAACUUGUUUCACCCCAUUCAC----UUC
.(((((((...-)))))))..........((((.((.((((...........((((....-----..)))).)))).)).))))...----... ( -11.70)
>consensus
UUGAAUACCCU_CUAUGCAUAGAGGCUAUAAUGAGGAGAGAAAACAUACAAAAAGUGAAA_____AAACUUGUUUCACCCCA_________AUC
..(((((......)))))...........((((((...........(((.....)))...........)))))).................... ( -1.73 =  -1.85 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:17 2006