Locus 965

Sequence ID X_DroMel_CAF1
Location 2,744,031 – 2,744,123
Length 92
Max. P 0.884641
window1566

overview

Window 6

Location 2,744,031 – 2,744,123
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 82.55
Mean single sequence MFE -24.68
Consensus MFE -18.26
Energy contribution -18.78
Covariance contribution 0.52
Combinations/Pair 1.13
Mean z-score -2.04
Structure conservation index 0.74
SVM decision value 0.93
SVM RNA-class probability 0.884641
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2744031 92 + 22224390
CCAGUUUAACUUUGACUGAAGAGUCAGUCAUUCCGGAAACUUGGAGUAGCUGCCUUCUUCAACUUGUUGAGGCACCCAUUCUUGGUCUUACU
.........(((..(((((((((.(((..((((((....)..)))))..))).).))))))....))..)))...(((....)))....... ( -24.10)
>DroSec_CAF1 132202 69 + 1
CCAGUUUAACUUUGACUGAAGAGUCAGUCAUGCCGGAAACUUGGAGUAGCUGCCUUCUUCAACUUGUUG-----------------------
.(((((..(((((((((((....)))))).....(....)..)))))))))).................----------------------- ( -15.00)
>DroSim_CAF1 118965 88 + 1
CCAGUUUAACUUUGACUGAAGAGUCAGUCAUUCCGGAAACUUGGAGUAGCUGCCUUCUUCAACUUGUUGAGGCACCCAUUCC----CUGGCU
((((........(((((((....)))))))....(....)..(((((.(.((((((...(.....)..)))))).).)))))----)))).. ( -25.80)
>DroEre_CAF1 147360 82 + 1
CCAGUUUAACUUUGACUGGCGAGUCAGUCAUUCCGGAAACUUGGAGUAGCUGGCUUCUUCAACUUGUUGAGGCGCCCAUUCC----------
..((((.......))))((((((((((..((((((....)..)))))..)))))).((((((....))))))))))......---------- ( -28.10)
>DroYak_CAF1 141534 87 + 1
CCAGCUUAACUUAGGCUGAAGAGUCAGUCAUUCCGGAAACUUGGAGUAGCUGCCAUCAUCAACUUGUUGAGGCAGCCAUUCC-----UGAUU
.(((((((...)))))))...(((((........(....)..(((((.((((((.(((.(.....).))))))))).)))))-----))))) ( -30.40)
>consensus
CCAGUUUAACUUUGACUGAAGAGUCAGUCAUUCCGGAAACUUGGAGUAGCUGCCUUCUUCAACUUGUUGAGGCACCCAUUCC_____U___U
.(((((.......((((((....))))))((((((....)..))))))))))....((((((....)))))).................... (-18.26 = -18.78 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:16 2006