Locus 961

Sequence ID X_DroMel_CAF1
Location 2,733,832 – 2,733,933
Length 101
Max. P 0.580590
window1561

overview

Window 1

Location 2,733,832 – 2,733,933
Length 101
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 96.70
Mean single sequence MFE -14.93
Consensus MFE -13.80
Energy contribution -13.80
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.69
Structure conservation index 0.92
SVM decision value 0.09
SVM RNA-class probability 0.580590
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2733832 101 - 22224390
AAUUCGCUAAAAUCGCCUUAUGGCCUUACAUUUUUAACCCACCGAAGUCCAAGCUUCUCCACCCACAUUUUCCAUUUCAUGCACUGUACAGUGAUUUCUCU
...(((((......(((....)))...................(((((....)))))................................)))))....... ( -12.80)
>DroSec_CAF1 122099 101 - 1
AAUUCGCUAAAAUCGCCUUAUGGCCUUACAUUUUUAACCCACCGAAGUCCAGGCUUCUCCACCCACAUUUUCCAUUUCUUGCUCGGUACAGUGAUUUCUCC
...(((((......(((....)))................((((((((....)))))...............((.....))...)))..)))))....... ( -16.00)
>DroSim_CAF1 110298 101 - 1
AAUUCGCUAAAAUCGCCUUAUGGCCUUACAUUUUUAACCCACCGAAGUCCAGGCUUCUCCACCCACAUUUUCCAUUUCUUGCUCGGUACAGUGAUUUCUCC
...(((((......(((....)))................((((((((....)))))...............((.....))...)))..)))))....... ( -16.00)
>consensus
AAUUCGCUAAAAUCGCCUUAUGGCCUUACAUUUUUAACCCACCGAAGUCCAGGCUUCUCCACCCACAUUUUCCAUUUCUUGCUCGGUACAGUGAUUUCUCC
...(((((......(((....)))...................(((((....)))))................................)))))....... (-13.80 = -13.80 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:11 2006