| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 384,977 – 385,070 |
| Length | 93 |
| Max. P | 0.659384 |
| Location | 384,977 – 385,070 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 72.15 |
| Mean single sequence MFE | -35.52 |
| Consensus MFE | -16.98 |
| Energy contribution | -16.02 |
| Covariance contribution | -0.97 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.659384 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 384977 93 - 22224390 CAAGGCUGCUGCUCCGGAUGCUCCUUCUCUAUCC-UCGCUCUCCGCAAAGGCCGG------GACAGCUCCGCCCGUCAACGAGCUUCUGCACACAGCCAA ...(((((.((...((((.((((...........-..((.....))...((.(((------(.....)))).))......)))).))))..))))))).. ( -28.30) >DroPse_CAF1 21123 96 - 1 CCCGUCCAGUGCAGCGGUGGCUGUC----GACCCGGUGCUGGCUGCUACAGCCGCACCACAGCCAGCGGUGCCCGUCAACGAGCUGCUGCAGACGGCUAA .(((((...(((((((((((((((.----.....(((((.(((((...)))))))))))))))).((((...))))......)))))))))))))).... ( -49.40) >DroSec_CAF1 18855 93 - 1 CAAGGCUGCUGCUCCGGAUGCUGCUUUUCUAUCC-UCGCAUUCCGCAAAGGCCGG------GACAGCUCCGCCUGUCAACGAUCUUCUGCACACAGCCAA ...(((((.((....((((((.............-..)))))).((((((..((.------(((((......)))))..))..))).))).))))))).. ( -28.56) >DroSim_CAF1 19103 93 - 1 CAAGGCUGCUGCUCCGGAUGCUGCUUCUCUAUCC-UCGCAUUCCGCAAAGGCCGG------GACAGCUCCGCCUGUCAACGAUCUUCUGCACACAGCCAA ...(((((.((....((((((.............-..)))))).((((((..((.------(((((......)))))..))..))).))).))))))).. ( -28.56) >DroEre_CAF1 19034 93 - 1 CAAGGCUGCUGCUUCGGAUGCCGCUGCUCCAUCG-CCACUCUCCGCGAAGGCCGG------GACAGCUCCGCCCGUCAACGAGCUUCUGCACACAGCCAA ...(((((.(((...(((....((((.(((...(-((..((.....)).)))..)------)))))))))((.((....)).))....)))..))))).. ( -31.20) >DroPer_CAF1 21679 96 - 1 CCCGUCCAGUGCAGCGGUGGCUGUC----GACCCGGUGCUGGCUGCUACAGCCGCGCCACAGCCAGCGGUGCCCAUCAACGAGCUGCUGCAGACGGCCAA .(((((...(((((((((((((((.----.....(((((.(((((...))))))))))))))))...(((....))).....)))))))))))))).... ( -47.10) >consensus CAAGGCUGCUGCUCCGGAUGCUGCUUCUCUAUCC_UCGCUCUCCGCAAAGGCCGG______GACAGCUCCGCCCGUCAACGAGCUUCUGCACACAGCCAA ...(((((.(((.((((.(((.......................)))....))))......((.((((.((........)))))))).)))..))))).. (-16.98 = -16.02 + -0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:10 2006