Locus 958

Sequence ID X_DroMel_CAF1
Location 2,722,078 – 2,722,187
Length 109
Max. P 0.894790
window1558

overview

Window 8

Location 2,722,078 – 2,722,187
Length 109
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 95.05
Mean single sequence MFE -24.74
Consensus MFE -20.52
Energy contribution -20.60
Covariance contribution 0.08
Combinations/Pair 1.08
Mean z-score -1.77
Structure conservation index 0.83
SVM decision value 0.98
SVM RNA-class probability 0.894790
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2722078 109 - 22224390
GCGUGGCAACAGGCAACGUUGACAGCAAAAAAUGAAAACAAGUGCAUGCCGUUGAAGAUGAGCAAAUUUCAUCAGAUAAUUGCGAAUAACAAAUGCGCUGAAGAACAGA
((.((....)).))...(((..((........))..))).(((((((((.((((..((((((.....))))))...)))).))(.....)..))))))).......... ( -23.10)
>DroSec_CAF1 110681 109 - 1
GCGUGGCAACAGGCAACGUUGACAGCAUAAAAUAAAAACAAGUGCAUGGCGUUGAAGAUGAGCAAAUUUCAUCAGAUAAUUGCGAAUAACAAAUGCGCUGAAGAACAGA
((.((....)).))...(((..((((............((......))(((((....((..((((...((....))...))))..))....)))))))))...)))... ( -23.80)
>DroSim_CAF1 98742 109 - 1
GCGUGGCAACAGGCAACGUUGACAGCAAAAAAUAAAAACAAGUGCAUGGCGUUGAAGAUGAGCAAAUUUCAUCAGAUAAUUGCGAAUAACAAAUGCGCUGAAGAACAGA
((.((....)).))...(((..((((............((......))(((((....((..((((...((....))...))))..))....)))))))))...)))... ( -23.80)
>DroEre_CAF1 125188 109 - 1
GCGUGGCAACGGGCAACGUUGACAGCAAAAAAUAAAAACAAGUGCAUGGCGUUGAAGAUGCGCAAAUUUCAUCAGCUAAUUGCGAAUUACAAAUGCGCUGAAGAACACA
((.((.(((((.....))))).))))..............(((((((.((((.......))))...........((.....)).........))))))).......... ( -25.10)
>DroYak_CAF1 119690 109 - 1
GCGUGGCAACAGGCAACGUUGACAGCAAAAAAUAAAAACAAGUGCAUGGCGUUGAAGAUGCGCAAAUUUCAUAAGAUAAUUGCGAAUUACAAAUGCGCUGAAGAGCGCG
((((..((((.(....))))).((((............((......))(((((...(((.(((((...((....))...))))).)))...)))))))))....)))). ( -27.90)
>consensus
GCGUGGCAACAGGCAACGUUGACAGCAAAAAAUAAAAACAAGUGCAUGGCGUUGAAGAUGAGCAAAUUUCAUCAGAUAAUUGCGAAUAACAAAUGCGCUGAAGAACAGA
((.((....)).))...(((..((((............((......))(((((....((..((((...((....))...))))..))....)))))))))...)))... (-20.52 = -20.60 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:08 2006