Locus 955

Sequence ID X_DroMel_CAF1
Location 2,700,929 – 2,701,029
Length 100
Max. P 0.590674
window1551

overview

Window 1

Location 2,700,929 – 2,701,029
Length 100
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 91.50
Mean single sequence MFE -24.10
Consensus MFE -18.42
Energy contribution -19.10
Covariance contribution 0.68
Combinations/Pair 1.08
Mean z-score -1.60
Structure conservation index 0.76
SVM decision value 0.11
SVM RNA-class probability 0.590674
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2700929 100 - 22224390
UUUC---AAAUGCAAAUUACUGCAAAUUGAAUACACGCCGACUGCAGGAGCGCUUGCUGACAUUACAUAAUUAAUUUGCGACUUAUUGCAAUUAUGGUUGGCC
.(((---((.((((......))))..))))).....((((((.(((((....)))))........((((((.....(((((....))))))))))))))))). ( -25.80)
>DroSec_CAF1 97262 100 - 1
UUUC---AAAUGCAAAUUACUGCAAAUUGAAUACACGCCGACUGCAGGAGCGCUUGCUGACAGUACAUAAUUAAUUUGCGACUUAUUGCAAUUAUGGUUGGCC
.(((---((.((((......))))..))))).....((((((.(((((....)))))........((((((.....(((((....))))))))))))))))). ( -25.80)
>DroSim_CAF1 85616 100 - 1
UUUC---AAAUGCAAAUUACUGCAAAUUGAAUACACGCCGACUGCAGGAGCGCUUGCUGACAGUACAUAAUUAAUUUGCGACUUAUUGCAAUUAUGGUUGGCC
.(((---((.((((......))))..))))).....((((((.(((((....)))))........((((((.....(((((....))))))))))))))))). ( -25.80)
>DroEre_CAF1 111178 103 - 1
UUUCUUUAAAUGCAAAUUACUACAAAUUGAAUGCAAGCCGAGUGUAGCAGCACUUGCUGGCAUUACAUAAUUAAUUUGCGACUUAUUGCAAUUAUGGUUGGCG
...........((..............(((((((.(((.((((((....))))))))).))))).))((((((..((((((....))))))...)))))))). ( -23.80)
>DroYak_CAF1 105883 100 - 1
UUUC---GAAUGAAAAUUGCUACAAAUUGAAUACACGCCAACUGCAGGAGCACUUGCCGACAUUACUUAAUUAAUUUGCGACUCAUUGCAAUUAUGGUUGGCC
....---.............................((((((((((((....)))))..................((((((....))))))....))))))). ( -19.30)
>consensus
UUUC___AAAUGCAAAUUACUGCAAAUUGAAUACACGCCGACUGCAGGAGCGCUUGCUGACAUUACAUAAUUAAUUUGCGACUUAUUGCAAUUAUGGUUGGCC
..........((((......))))............((((((.(((((....)))))........((((((.....(((((....))))))))))))))))). (-18.42 = -19.10 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:02 2006