| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,690,018 – 2,690,117 |
| Length | 99 |
| Max. P | 0.990235 |
| Location | 2,690,018 – 2,690,117 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 66.18 |
| Mean single sequence MFE | -20.30 |
| Consensus MFE | -11.17 |
| Energy contribution | -11.53 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.55 |
| SVM decision value | 2.20 |
| SVM RNA-class probability | 0.990235 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2690018 99 + 22224390 CUAUCUUUU---CCGCCGAAUUUUCCCUUCU-GCGAGACUCCCAAACCAACU--GCU--------CUUCGCAUUCUCUGGCAGCGAAAUCAUUUUUGUUGCCAUUUCCAUGGG ........(---((((.(((.......))).-))).))..((((.......(--((.--------....))).....(((((((((((....)))))))))))......)))) ( -25.70) >DroPse_CAF1 131908 98 + 1 CUAUCUC----ACUCUGGAGCACUCCU-CUU-A------ACCCGGUCCAUCCUUAGCCUUUCAGAUUUCACAUUCUUUGGCAGAAAAAUAAUUUUGGCUGCUAUUUUUUU--- .......----..(((((((.....))-)..-.------....(((.........)))...))))............((((((..(((....)))..)))))).......--- ( -14.10) >DroSec_CAF1 86710 98 + 1 CUAUCUUUU---CCCCCGAAUUCUCCC-UCU-GCGAGACACCCAGACCAACU--GCU--------CUUCGCAUUCUCUGGCAGCGAAAUCAUUUUUGUUGCCAUUUCCAUGGG .........---..((((.........-..(-((((((....(((.....))--).)--------).))))).....(((((((((((....)))))))))))......)))) ( -25.40) >DroEre_CAF1 100475 104 + 1 CCAUCUAUCUUACCCCCGAAUUUUCCC-UUUGGCGAGACACCCAGACCAACUGUGCU--------CUUCACAUUCCUUGGCAGCGAAAUCAUUUUUGUUGCCAUUUCGUUGGG .......((((....(((((.......-))))).))))........(((((((((..--------...)))).....(((((((((((....)))))))))))....))))). ( -26.40) >DroYak_CAF1 94401 92 + 1 CUAUCUUUCC--CCCUCGAAUUUUCCC-CUU-GCGAGACUCCCAGACCAACU-----------------ACAUUUUCUGGCAGCGAACUAAUUUUUGUUGCUAUUUCCUUGGA .......(((--..((((.........-...-.))))...............-----------------........((((((((((......)))))))))).......))) ( -14.72) >DroPer_CAF1 150723 98 + 1 CUAUCUC----ACUCUGGAGCACUCCU-CUU-A------ACCCGGUCCAUCCUUAGCCUUCCAGAUUUCACAUUCUUUGGCAGAAAAAUAAUUUUGGCUGCUAUUUUUUU--- .......----..(((((((.......-...-.------....(((.........))))))))))............((((((..(((....)))..)))))).......--- ( -15.46) >consensus CUAUCUUU____CCCCCGAAUUCUCCC_CUU_GCGAGACACCCAGACCAACU__GCU________CUUCACAUUCUCUGGCAGCGAAAUAAUUUUUGUUGCCAUUUCCUUGGG .............................................................................(((((((((((....))))))))))).......... (-11.17 = -11.53 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:59 2006