Locus 952

Sequence ID X_DroMel_CAF1
Location 2,679,850 – 2,679,948
Length 98
Max. P 0.959382
window1547

overview

Window 7

Location 2,679,850 – 2,679,948
Length 98
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 77.44
Mean single sequence MFE -29.65
Consensus MFE -16.06
Energy contribution -18.88
Covariance contribution 2.81
Combinations/Pair 1.21
Mean z-score -2.55
Structure conservation index 0.54
SVM decision value 1.50
SVM RNA-class probability 0.959382
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2679850 98 + 22224390
UCCUUGUUGCCAGGACU--ACGGGCAAAGAAUCGUGGCUGGUACGAUAAGCCCUACCAGAAGGGAACUUUGAUGCCGUUUUAAAGUGCAUCAAGAAUUAA
..(((((((((((..((--((((........)))))))))))..))))))((((......))))...(((((((((........).))))))))...... ( -29.50)
>DroSec_CAF1 85134 98 + 1
UCCUUGUUGCUAGGACU--ACGGGAAAAGAAUCGUGGUUGGUACGGUAAGCCCUGGCAGAAGGGAACUUUGAUGUCAUUUUAAAGUGCAUCAAGAAUUAA
(((((.(((((((((((--((((........))))))))(((.......)))))))))).)))))..(((((((.((((....)))))))))))...... ( -33.10)
>DroEre_CAF1 98926 80 + 1
UCCUUGUUGCCAGGAUGCUACG-CAAAAGGACCACGGAUCGU-------------------GGGAACUUUGAUGCCGCUUUAAAGUGCAUCAAGAAUUAA
(((((.((((.((....))..)-))))))))(((((...)))-------------------))....((((((((.(((....)))))))))))...... ( -23.10)
>DroYak_CAF1 92839 98 + 1
UCCAUGUUGCCAGGACG--ACGGGAUAAGAACCGUGGAGCGUACGGUAAUCCGUGGCAAAAGGGAACUUUGAUGCCGUUUUAAAGUGCAUCAAGAAUUAA
(((...(((((....(.--((((........)))).).....((((....)))))))))...)))..(((((((((........).))))))))...... ( -32.90)
>consensus
UCCUUGUUGCCAGGACG__ACGGGAAAAGAACCGUGGAUCGUACGGUAAGCCCUGGCAGAAGGGAACUUUGAUGCCGUUUUAAAGUGCAUCAAGAAUUAA
(((((.(((((((((((..((((........))))....))).........)))))))).)))))..(((((((((........).))))))))...... (-16.06 = -18.88 +   2.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:58 2006