Locus 951

Sequence ID X_DroMel_CAF1
Location 2,672,792 – 2,672,884
Length 92
Max. P 0.599425
window1546

overview

Window 6

Location 2,672,792 – 2,672,884
Length 92
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 87.19
Mean single sequence MFE -22.77
Consensus MFE -19.35
Energy contribution -19.74
Covariance contribution 0.39
Combinations/Pair 1.08
Mean z-score -1.62
Structure conservation index 0.85
SVM decision value 0.13
SVM RNA-class probability 0.599425
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2672792 92 + 22224390
AUUUCUUA--UUCGGGUAUCCUGUCGCCUUGGGCCGACUUUUUAAUUGCAUUAACACGCUAAUGUAAGUCGCAUAAUGCCGACAGCUUUCCCC--------C
........--...(((....(((((((.(((.((.((((.......(((((((......))))))))))))).))).).))))))....))).--------. ( -23.71)
>DroPse_CAF1 120070 101 + 1
AUAUCUUCUUUUUGGGUAUCCUGGUGCCCUGAGCCGACUUUUUAAUUGCAUUAACACGCUAAUGUAAGUCGCAUAAUGCCGACAGCUGUCCCCCU-CCUCAU
.............((((((....)))))).(((..(((.......((((((((......))))))))(((((.....).))))....)))...))-)..... ( -23.20)
>DroSim_CAF1 74102 100 + 1
AUUUCUUA--UUCGGGUAUCCUGUCGCCUUGGGCCGACUUUUUAAUUGCAUUAACACGCUAAUGUAAGUCGCAUAAUGCCGACAGCUGUCCUCCGACCCCCC
........--.(((((....(((((((.(((.((.((((.......(((((((......))))))))))))).))).).))))))......)))))...... ( -23.21)
>DroEre_CAF1 89870 92 + 1
AUUUCAUA--UUCGGGUAUCCUGUCGCCUUGGGCCGACUUUUUAAUUGCAUUAACACGCUAAUGUAAGUCGCAUAAUGCCGACAGCUUUCCCUC--------
........--...(((....(((((((.(((.((.((((.......(((((((......))))))))))))).))).).))))))....)))..-------- ( -24.11)
>DroYak_CAF1 85871 93 + 1
AUUCCUUA--UUCGGGUAUCCUGUCGCCUUGGGCCGACUUUUUAAUUGCAUUAACACGCUAAUGUAAGUCUCAUAAUGCCGACAGCUGUCCUCCG-------
........--...((..(..((((((((...))).((((.......(((((((......)))))))))))..........))))).)..))....------- ( -19.21)
>DroPer_CAF1 137679 101 + 1
AUAUCUUCUUUUUGGGUAUCCUGGUGCCCUGAGCCGACUUUUUAAUUGCAUUAACACGCUAAUGUAAGUCGCAUAAUGCCGACAGCUGUCCCCCU-CCUCAU
.............((((((....)))))).(((..(((.......((((((((......))))))))(((((.....).))))....)))...))-)..... ( -23.20)
>consensus
AUUUCUUA__UUCGGGUAUCCUGUCGCCUUGGGCCGACUUUUUAAUUGCAUUAACACGCUAAUGUAAGUCGCAUAAUGCCGACAGCUGUCCCCC________
.............(((....(((((((.(((.((.((((.......(((((((......))))))))))))).))).).))))))....))).......... (-19.35 = -19.74 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:57 2006