Locus 950

Sequence ID X_DroMel_CAF1
Location 2,670,590 – 2,670,696
Length 106
Max. P 0.557048
window1545

overview

Window 5

Location 2,670,590 – 2,670,696
Length 106
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 94.81
Mean single sequence MFE -16.67
Consensus MFE -15.54
Energy contribution -15.43
Covariance contribution -0.11
Combinations/Pair 1.09
Mean z-score -0.91
Structure conservation index 0.93
SVM decision value 0.05
SVM RNA-class probability 0.557048
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2670590 106 + 22224390
AGGGCUUCGCUCAUUUAGCUAGUUAAUUGCAUUUCAUUUAAUUUCUGUAAUUUCUGUAAUUUCUUUUGGCUUAUUGACGAUAUUUUGUUGCCAUUUC--UCGUUACGU
..(((.(((.(((...((((((..(((((((.......................)))))))....))))))...)))))).........))).....--......... ( -16.90)
>DroSec_CAF1 76616 106 + 1
AGGGCUUCGCUCAUUUAGCUAGUUAAUUGCAUUUCAUUUAAUUUCUGUAAUUUCUGUAAUUUCUUUUGGCUUAUUGACGAUAUUUUGUUGCCAUUUC--UCGUUACGU
..(((.(((.(((...((((((..(((((((.......................)))))))....))))))...)))))).........))).....--......... ( -16.90)
>DroSim_CAF1 71994 106 + 1
AGGGCUUCGCUCAUUUAGCUAGUUAAUUGCAUUUCAUUUAAUUUCUGUAAUUUCUGUAAUUUCUUUUGGCUUAUUGACGAUAUUUUGUUGCCAUUUC--UCGUUACGU
..(((.(((.(((...((((((..(((((((.......................)))))))....))))))...)))))).........))).....--......... ( -16.90)
>DroEre_CAF1 87586 106 + 1
AGGGCUUCGCUCAUUUAGCUAGUUAAUUGCAUUUCAUUUAAUUUGUGCAAUUUCUGUAAUUUCUUUUGGCUUAUUGACGAUAUUUUGUUGCCAUUUC--UCGUUACGU
.((((...))))........((..((((((((............)))))))).))(((((......((((.....(((((....)))))))))....--..))))).. ( -19.80)
>DroYak_CAF1 83536 106 + 1
AGGGCUUCGCUCAUUUAGCUAGUUAAUUGCAUUUCAUUUAAUUUCUGUAAUUUCUGUAAUUUCUUUUGGCUUAUUGACGAUAUUUUGUUGCCAUUUC--UCGUUACGU
..(((.(((.(((...((((((..(((((((.......................)))))))....))))))...)))))).........))).....--......... ( -16.90)
>DroAna_CAF1 115586 99 + 1
AAGGCUUUGCUCAUUUAGCUGGUUAAUUGCAUUUCAUUUAAUUU---------CUGUAAUUUCUUUUGCCUUAUUGACGAUAUUUUGUUGCCAUUUCUCUCGUUACGU
(((((...(((.....))).((..(((((((.............---------.))))))).))...)))))..((((((.....((....))......))))))... ( -12.64)
>consensus
AGGGCUUCGCUCAUUUAGCUAGUUAAUUGCAUUUCAUUUAAUUUCUGUAAUUUCUGUAAUUUCUUUUGGCUUAUUGACGAUAUUUUGUUGCCAUUUC__UCGUUACGU
..(((.(((.(((...((((((..(((((((.......................)))))))....))))))...)))))).........)))................ (-15.54 = -15.43 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:56 2006