Locus 949

Sequence ID X_DroMel_CAF1
Location 2,667,330 – 2,667,426
Length 96
Max. P 0.622849
window1544

overview

Window 4

Location 2,667,330 – 2,667,426
Length 96
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 88.04
Mean single sequence MFE -35.55
Consensus MFE -25.76
Energy contribution -26.95
Covariance contribution 1.19
Combinations/Pair 1.12
Mean z-score -1.63
Structure conservation index 0.72
SVM decision value 0.18
SVM RNA-class probability 0.622849
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2667330 96 - 22224390
CA-AAUCUGCAAAGGGGCUGGCCGCUAGGUGGCGCCACACCGGCGACAAAAGCCGUUCAA--AGGGGUCGAAUUUCUUGGCCACCUUGGCCAUCUCAAU
..-..........((((.((((((..(((((((.......((((.......))))....(--((..((...))..))).)))))))))))))))))... ( -36.30)
>DroSim_CAF1 67853 94 - 1
CA-AAUCCGCG--GGGGCUGGCCGCUAGGUGGCGCCACACCGGCGACAAAAGCCGUUCAA--AGGGGUCGAAUUUCUUGGCCACCUUGGCCAUCUCAAU
..-........--((((.((((((..(((((((.......((((.......))))....(--((..((...))..))).)))))))))))))))))... ( -36.10)
>DroEre_CAF1 84238 95 - 1
CAAAAACUGCG--GGGUCUGGCCGCUAGGUGGCGCCACACCGGGGACAAAAGCCGUUCAAAAAGGGGUCGAAUUGC-UGGCCACCUU-GCCAUCUCAAU
........(((--((((.((((.(((....))))))).)))(....).....)))).....(((((((((......-))))).))))-........... ( -30.10)
>DroYak_CAF1 80307 92 - 1
CA-AAUCUGCG--GGGACCGGCCGCUAGGUGGCCGGUCACCGGGGACAAUAACUGUUCAA--AGGGGUCGAAUUGC-UGGCCACCUU-GCCAUCUCAAU
..-..(((.((--(.((((((((((...)))))))))).))).))).............(--((((((((......-))))).))))-........... ( -39.70)
>consensus
CA_AAUCUGCG__GGGGCUGGCCGCUAGGUGGCGCCACACCGGCGACAAAAGCCGUUCAA__AGGGGUCGAAUUGC_UGGCCACCUU_GCCAUCUCAAU
.............((((.((((((..((((((((((.....)))(((.....((.........)).)))..........)))))))))))))))))... (-25.76 = -26.95 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:55 2006