Locus 947

Sequence ID X_DroMel_CAF1
Location 2,659,778 – 2,659,880
Length 102
Max. P 0.669981
window1539

overview

Window 9

Location 2,659,778 – 2,659,880
Length 102
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 87.07
Mean single sequence MFE -26.17
Consensus MFE -18.52
Energy contribution -19.28
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.74
Structure conservation index 0.71
SVM decision value 0.29
SVM RNA-class probability 0.669981
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2659778 102 + 22224390
UUUACAGGCACACAUGUGUGUGUUGCUCUUACUGCGAGUAAUAAGUCAAGUCGCUGGCAACUGGCAACUGGAGCAGA-ACACUGGGAAAA-AAUCAUAUUAAAU
((..(((((((((....))))))((((((...(((.(((....(((......)))....))).)))...))))))..-...)))..))..-............. ( -28.20)
>DroSec_CAF1 66288 99 + 1
UUUACAGGCA--CAUGUGUGCGUUGCUCUUACUGCGAGUAAUAAGUCAAGUCGCAGGCAACUGACAACUGGAGCAGA-ACACUGAGAAA--AAUCUAAUUAAAA
....((((((--(....)))).((((((((((.....)))........(((.((((....))).).)))))))))).-...))).....--............. ( -23.90)
>DroSim_CAF1 60835 99 + 1
UUUACAGGCA--CAUGUGUGCGUUGCUCUUACUGCGAGUAAUAAGUCAAGUCGCAGGCAACUGGCAACUGGAGCAGA-ACACUGAGAAA--AAUCUAAUUAAAA
....((((((--(....)))).(((((((..((((((.(.........).))))))((.....))....))))))).-...))).....--............. ( -26.60)
>DroYak_CAF1 72791 93 + 1
UUUACAGGCA--CAUGUGUGUGUUGCUCUUUCUGCGAGUAAUAAGUCAAGUCGCAGGCAACCGGCAACUGGAACCGAAACACUGUGAGAAAAAUC---------
((((((((((--(....))))((((((...(((((((.(.........).))))))).....)))))).............))))))).......--------- ( -26.00)
>consensus
UUUACAGGCA__CAUGUGUGCGUUGCUCUUACUGCGAGUAAUAAGUCAAGUCGCAGGCAACUGGCAACUGGAGCAGA_ACACUGAGAAA__AAUCUAAUUAAAA
............((.((((...(((((((..((((((.(.........).))))))......(....).)))))))..)))))).................... (-18.52 = -19.28 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:51 2006