Locus 946

Sequence ID X_DroMel_CAF1
Location 2,659,618 – 2,659,738
Length 120
Max. P 0.500000
window1538

overview

Window 8

Location 2,659,618 – 2,659,738
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 99.67
Mean single sequence MFE -25.20
Consensus MFE -25.34
Energy contribution -25.54
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.20
Structure conservation index 1.01
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2659618 120 - 22224390
AACAUCAAAUUAGCUUCAUAAAAAUGUCGACUCGCUCAGUGCCACUGAGUUUUUGGGUGGUUGGUGUGAAACAAUACAGUUUAUAAAAAUGAGAGUGCAAAAAUAUUUUUAUGAUAAAUG
...............((((((((((((.....(((((...((((((.((...)).))))))..((((......))))...............))))).....))))))))))))...... ( -25.90)
>DroSec_CAF1 66128 120 - 1
AACAUCAAAUUAGCUUCAUAAAAAUGUCGACUCGCUCAGUGCCACUGAGUUUUUGGGUGGUUGGUGUGAAACAAUACAGUUUAUAAAAAUGAGAGUGCAAAAAUAUUUCUAUGAUAAAUG
...............(((((.((((((.....(((((...((((((.((...)).))))))..((((......))))...............))))).....)))))).)))))...... ( -22.40)
>DroSim_CAF1 60675 120 - 1
AACAUCAAAUUAGCUUCAUAAAAAUGUCGACUCGCUCAGUGCCACUGAGUUUUUGGGUGGUUGGUGUGAAACAAUACAGUUUAUAAAAAUGAGAGUGCAAAAAUAUUUUUAUGAUAAAUG
...............((((((((((((.....(((((...((((((.((...)).))))))..((((......))))...............))))).....))))))))))))...... ( -25.90)
>DroEre_CAF1 76539 120 - 1
AACAUCAAAUUAGCUUCAUAAAAAUGUCGACUCGCUCAGUGCCACUGAGUUUUUGGGUGGUUGGUGUGAAACAAUACAGUUUAUAAAAAUGAGAGUGCAAAAAUAUUUUUAUGAUAAAUG
...............((((((((((((.....(((((...((((((.((...)).))))))..((((......))))...............))))).....))))))))))))...... ( -25.90)
>DroYak_CAF1 72631 120 - 1
AACAUCAAAUUAGCUUCAUAAAAAUGUCGACUCGCUCAGUGCCACUGAGUUUUUGGGUGGUUGGUGUGAAACAAUACAGUUUAUAAAAAUGAGAGUGCAAAAAUAUUUUUAUGAUAAAUG
...............((((((((((((.....(((((...((((((.((...)).))))))..((((......))))...............))))).....))))))))))))...... ( -25.90)
>consensus
AACAUCAAAUUAGCUUCAUAAAAAUGUCGACUCGCUCAGUGCCACUGAGUUUUUGGGUGGUUGGUGUGAAACAAUACAGUUUAUAAAAAUGAGAGUGCAAAAAUAUUUUUAUGAUAAAUG
...............((((((((((((.....(((((...((((((.((...)).))))))..((((......))))...............))))).....))))))))))))...... (-25.34 = -25.54 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:50 2006