Locus 945

Sequence ID X_DroMel_CAF1
Location 2,659,305 – 2,659,401
Length 96
Max. P 0.934102
window1537

overview

Window 7

Location 2,659,305 – 2,659,401
Length 96
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 81.71
Mean single sequence MFE -35.35
Consensus MFE -28.69
Energy contribution -30.00
Covariance contribution 1.31
Combinations/Pair 1.03
Mean z-score -2.04
Structure conservation index 0.81
SVM decision value 1.23
SVM RNA-class probability 0.934102
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2659305 96 - 22224390
------------------GG--GUAGCGGGAAAAGCGGAAAAGUGGCAAAGGUACGGCAGCAACAGUUGUCCUUUGUCACCAGC---CCCGCGCGCCGAGUUUCGACAUUUCCAAAAAC
------------------.(--((.(((((....((......((((((((((.(((((.......)))))))))))))))..))---)))))..)))...................... ( -33.50)
>DroSec_CAF1 65808 96 - 1
------------------GG--UAAGCGGGAAAAGCGGAAAAGUGGCAAAGGUACGUCAGCAACAGUUGUCCUUUGUCACCAGC---ACCGCGCUCCGAGUUUCGGCUUUUCCAAAACC
------------------((--(.....((((((((.((((.((((((((((.....((((....)))).)))))))))).(((---.....))).....)))).))))))))...))) ( -36.40)
>DroEre_CAF1 76124 118 - 1
GAAAAUCGGAGAAAAGCGGGCACAAGCGGGAAAAGCAGAAAAGUGGCAAAGGUACGGCAGCAACAGUUGG-CUUUGUCACCAGCUCCCCCGCGCCCCGAGUUUCGGCUUUUCCAAAAGC
........(.(((((((((((....(((((...(((......(((((((((...((((.......)))).-)))))))))..)))..)))))))))((.....))))))))))...... ( -40.20)
>DroYak_CAF1 72283 96 - 1
------------------GG--CAACCGGGAAAAGCAGAAAAGUGGCAAAGGUACGGCAGCAACAGUUGUCCUUUGUCACCAGC---CCCGCGCUCCGAGUUUUGGCUGUUCCAAAAAC
------------------(.--...)..((((..........((((((((((.(((((.......)))))))))))))))((((---(..((.......))...)))))))))...... ( -31.30)
>consensus
__________________GG__CAAGCGGGAAAAGCAGAAAAGUGGCAAAGGUACGGCAGCAACAGUUGUCCUUUGUCACCAGC___CCCGCGCUCCGAGUUUCGGCUUUUCCAAAAAC
............................((((((((.((((.((((((((((.(((((.......)))))))))))))))..((......))........)))).))))))))...... (-28.69 = -30.00 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:48 2006