Locus 942

Sequence ID X_DroMel_CAF1
Location 2,633,035 – 2,633,125
Length 90
Max. P 0.753371
window1533

overview

Window 3

Location 2,633,035 – 2,633,125
Length 90
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 97.46
Mean single sequence MFE -22.24
Consensus MFE -19.18
Energy contribution -19.38
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.55
Structure conservation index 0.86
SVM decision value 0.48
SVM RNA-class probability 0.753371
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2633035 90 - 22224390
CACUCAUUUGGGUCCGCC-CCAAUCCAAUGAGGCUCAGCACAACUAACCAGAUUUGGUGAUAAAUGUGUUAAAGCCUUGAGAUAUAUGAAC
..(((..(((((.....)-))))......((((((.((((((....(((......)))......))))))..))))))))).......... ( -24.90)
>DroSec_CAF1 40246 90 - 1
CCCUCAUUUGGGUCCGCC-CCAAUCCAAUGAGGCUCAGCACAACUAACAAGAUUUGGUGAUAAAUGUGUUAAAGCCUUGAGAUAUAUGCAC
..(((..(((((.....)-))))......((((((.(((((((((((......)))))......))))))..))))))))).......... ( -22.20)
>DroSim_CAF1 35509 90 - 1
CCCUCAUUUGGGUCCGCC-CCAAUCCAAUGAGGCUCAGCACAACUAACAAGAUUUGGUGAUAAAUGUGUUAAAGCCUUGAGAUAUAUGCAC
..(((..(((((.....)-))))......((((((.(((((((((((......)))))......))))))..))))))))).......... ( -22.20)
>DroEre_CAF1 47842 91 - 1
CCCUCAUUUGGGUCCGCCCCCAAUCCAAUGAGGCUCAGCACAACUAACAAGAUUUGGUGAUAAAUGCGUUAAAGCCUUGAGAUAUAUGCAC
..(((..(((((......)))))......((((((..(((..(((((......)))))......))).....))))))))).......... ( -19.70)
>DroYak_CAF1 45182 90 - 1
CCCUCAUUUGGGUCCGCC-CCAAUCCAAUGAGGCUCAGCACAACUAACAAGAUUUGGUGAUAAAUGUGUUAAAGCCUUGAGAUAUAUGUAC
..(((..(((((.....)-))))......((((((.(((((((((((......)))))......))))))..))))))))).......... ( -22.20)
>consensus
CCCUCAUUUGGGUCCGCC_CCAAUCCAAUGAGGCUCAGCACAACUAACAAGAUUUGGUGAUAAAUGUGUUAAAGCCUUGAGAUAUAUGCAC
..(((..((((((.........)))))).((((((.(((((((((((......)))))......))))))..))))))))).......... (-19.18 = -19.38 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:45 2006