Locus 941

Sequence ID X_DroMel_CAF1
Location 2,627,670 – 2,627,777
Length 107
Max. P 0.959459
window1532

overview

Window 2

Location 2,627,670 – 2,627,777
Length 107
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 81.54
Mean single sequence MFE -33.18
Consensus MFE -26.01
Energy contribution -25.77
Covariance contribution -0.25
Combinations/Pair 1.16
Mean z-score -3.50
Structure conservation index 0.78
SVM decision value 1.50
SVM RNA-class probability 0.959459
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2627670 107 - 22224390
ACCUCUGGCGAAAAAAAAACCCUUUUCGUGUGGCGUGUUGAGUGCCUAAUAAAAUCAUAAAAUAGCAGGUGUUUAGCGCGCCACAAAACGCCCAAAAA-GACAAGCCA
......((((((((........))))).((((((((((((((..(((..((...........))..)))..)))))))))))))).............-.....))). ( -36.00)
>DroVir_CAF1 52089 90 - 1
-----U-----------GGCUCUCUGACUGUGGCGUGUUGAGUGUCUAAUAAAAUCAUAAAAUAGCAGGUGUUUAGCGUUCUACAGAGUGUUCAAAAG-GACAGG-CA
-----.-----------.(((......((((((..(((((((..(((..((...........))..)))..)))))))..))))))..(((((....)-))))))-). ( -23.20)
>DroPse_CAF1 25738 96 - 1
AUCCUU-----------GCCCCAGUUCGUGUGGCGUGUUGAGUGCCUAAUAAAAUCAUAAAAUAGCAGGUGUUUAGCGCGCCACAAAGCGCCCAAAAG-GACAGGACA
.(((((-----------......(((..((((((((((((((..(((..((...........))..)))..)))))))))))))).)))......)))-))....... ( -35.60)
>DroEre_CAF1 37077 106 - 1
ACACUUGGUGGAGA--AACCCCUUUUCGUGUGGCGUGUUGAGUGCCUAAUAAAAUCAUAAAAUAGCAGGUGUUUAGCGCGCCACAAAACGCCCAAAAAGGACAACCCA
......((((((((--(.....))))).((((((((((((((..(((..((...........))..)))..))))))))))))))...))))......((.....)). ( -36.40)
>DroYak_CAF1 38266 104 - 1
ACCCUUGGC-GAUA--AACCCCUUUUCGUGUGGCGUGUUGAGUGCCUAAUAAAAUCAUAAAAUAGCAGGUGUUUAGCGCGCCACAAAACGCCCAAAAA-GACAACCCA
......(((-(...--.((........))(((((((((((((..(((..((...........))..)))..)))))))))))))....))))......-......... ( -32.30)
>DroPer_CAF1 29402 96 - 1
AUCCUU-----------GCCCCAGUUCGUGUGGCGUGUUGAGUGCCUAAUAAAAUCAUAAAAUAGCAGGUGUUUAGCGCGCCACAAAGCGCCCAAAAG-GACAGGACA
.(((((-----------......(((..((((((((((((((..(((..((...........))..)))..)))))))))))))).)))......)))-))....... ( -35.60)
>consensus
ACCCUU___________ACCCCUUUUCGUGUGGCGUGUUGAGUGCCUAAUAAAAUCAUAAAAUAGCAGGUGUUUAGCGCGCCACAAAACGCCCAAAAA_GACAAGCCA
............................((((((((((((((..(((..((...........))..)))..))))))))))))))....................... (-26.01 = -25.77 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:44 2006