Locus 940

Sequence ID X_DroMel_CAF1
Location 2,626,879 – 2,626,971
Length 92
Max. P 0.999738
window1531

overview

Window 1

Location 2,626,879 – 2,626,971
Length 92
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 90.85
Mean single sequence MFE -15.78
Consensus MFE -14.87
Energy contribution -14.92
Covariance contribution 0.06
Combinations/Pair 1.06
Mean z-score -2.90
Structure conservation index 0.94
SVM decision value 3.98
SVM RNA-class probability 0.999738
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2626879 92 + 22224390
ACCCCAAAAACCCGAUCCCACUCCCUCGUGUAGGCAACAUUUUUCAA-UUAACAGACGAACGAAAAAUGUAUGACAUGCCACACAUAGA-UACU
...........................((((.(((((((((((((..-.............)))))))))......)))))))).....-.... ( -16.16)
>DroSec_CAF1 34026 92 + 1
CCCCCAAAAACCCGAUCCCACUCCCUCGUGUAGGCAACAUUUUUCAA-UUAACAGACGAACGAAAAAUGUAUGACAUGCCACACAUAGA-UACU
...........................((((.(((((((((((((..-.............)))))))))......)))))))).....-.... ( -16.16)
>DroSim_CAF1 31672 94 + 1
CCCCCAAAAACCCGAUCCCACUCCCUCGUGUAGGCAACAUUUUUCAAGUUAACAGACGAACGAAAAAUGUAUGACAUGCCACAUAUGCAGUACU
...................(((.(...((((.(((((((((((((..(((....)))....)))))))))......))))))))..).)))... ( -16.00)
>DroEre_CAF1 36230 90 + 1
CCCC--AAAACCCAAUCCCACUCCCUCGUGUAGGCAACAUUUUUCAA-UUAACAAACGAACGAAAAAUGUAUGACAUGCCACACAUAGA-UACU
....--.....................((((.(((((((((((((..-.............)))))))))......)))))))).....-.... ( -16.16)
>DroYak_CAF1 37412 90 + 1
CCCC--AAAACCCAAUCCCACUCCCUCGUGUAGGCAACAUUUUUCAA-UUAACAAACGAACGAAAAAUGUAUGACAUGCCACACAUAGA-UACU
....--.....................((((.(((((((((((((..-.............)))))))))......)))))))).....-.... ( -16.16)
>DroAna_CAF1 48346 89 + 1
ACCACCACCACCCCAUGC---CCCCUUAUGUAGGCAACAUUUUUCAA-UUAACAAACGAACGAAAAAUGUAUGACAUGCCACACAUAGA-CACU
..................---....((((((.(((((((((((((..-.............)))))))))......))))..)))))).-.... ( -14.06)
>consensus
CCCCCAAAAACCCGAUCCCACUCCCUCGUGUAGGCAACAUUUUUCAA_UUAACAAACGAACGAAAAAUGUAUGACAUGCCACACAUAGA_UACU
...........................((((.(((((((((((((................)))))))))......)))))))).......... (-14.87 = -14.92 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:43 2006