Locus 937

Sequence ID X_DroMel_CAF1
Location 2,610,239 – 2,610,352
Length 113
Max. P 0.954412
window1528

overview

Window 8

Location 2,610,239 – 2,610,352
Length 113
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 96.90
Mean single sequence MFE -22.60
Consensus MFE -21.19
Energy contribution -21.25
Covariance contribution 0.06
Combinations/Pair 1.03
Mean z-score -2.45
Structure conservation index 0.94
SVM decision value 1.44
SVM RNA-class probability 0.954412
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2610239 113 + 22224390
AUUUGCUAAUGCUGAUUGAUUAUAUAAACGAUACAGAACACAAGUUCAUUUUAAAUUAAUCCAUGUUUGUGUAAUGCACACAAUGUGUGUCACACAUUUUAUAUAAUUCAUUA
....((....))((((.(((((((((((.......((((....))))....................(((((.((((((.....)))))).))))).))))))))))).)))) ( -23.70)
>DroSec_CAF1 18187 113 + 1
AUUUGCUAAUGCUGAUUGAUUAUAUAAACGAUACAGAACACAAGUUCAAUUUAAAUUAAUCCAUGUUUGUGUAAUGCACACAAUGUGUGUCACACAUUUUAUAUAAUUUAUUA
....((....))((((.(((((((((((.......((((....))))....................(((((.((((((.....)))))).))))).))))))))))).)))) ( -23.70)
>DroSim_CAF1 17877 113 + 1
AUUUGCUAAUGCUGAUUGAUUAUAUAAACGAUACAGAACACAAGUUCAAUUUAAAUUAAUCCAUGUUUGUGUAAUGCACACAAUGUGUGUCACACAUUUUAUAUAAUUUAUUA
....((....))((((.(((((((((((.......((((....))))....................(((((.((((((.....)))))).))))).))))))))))).)))) ( -23.70)
>DroYak_CAF1 19646 113 + 1
AUUUCCUAAUGCUGAUUGAUUAUAUAAACGAUACAGAAAACAAGUUCAAUUUGAAUUAAUCCACGUUUGUGUAAUGCAUACAAUGUGUGUCACACAUUUUAUAUAAUUUAUUA
............((((.(((((((((((..............(((((.....)))))..........(((((.((((((.....)))))).))))).))))))))))).)))) ( -19.30)
>consensus
AUUUGCUAAUGCUGAUUGAUUAUAUAAACGAUACAGAACACAAGUUCAAUUUAAAUUAAUCCAUGUUUGUGUAAUGCACACAAUGUGUGUCACACAUUUUAUAUAAUUUAUUA
............((((.(((((((((((.......((((....))))....................(((((.((((((.....)))))).))))).))))))))))).)))) (-21.19 = -21.25 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:40 2006