| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,609,746 – 2,609,855 |
| Length | 109 |
| Max. P | 0.996759 |
| Location | 2,609,746 – 2,609,855 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 77.36 |
| Mean single sequence MFE | -33.10 |
| Consensus MFE | -24.96 |
| Energy contribution | -25.63 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.75 |
| SVM decision value | 2.74 |
| SVM RNA-class probability | 0.996759 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2609746 109 + 22224390 AAGCUUACAGAUAUUUUUUUUUUAGUAUUUCCGCGAGUAAAGCGCCAAACUAUUUUUCUCUCUCUGUAGAGAUGAAGAUAUGACCGGGUGGCGGAGGGAUGGUGGGGGA ...(((((.((((((........))))))(((((.......))((((..((((((((.(((((....))))).))))))).....)..)))))))......)))))... ( -26.10) >DroSec_CAF1 17704 100 + 1 A--------UAUAUUUU-UUUGGAGUAUUUCCGCGCGUUAAGUGCCAAACCUGGUUUCUCUCUCUGUAGAGAUGAGAAUAUGACCGGGUGGCGGAGGGAUGGCGGGGAA .--------........-.........(..((((.((((...((((..((((((((((((((((....)))).))))....))))))))))))....))))))))..). ( -38.00) >DroSim_CAF1 17407 87 + 1 A--------UAUAU--------------UUCCGCGCAUAAAGCGCCAAACCUGGUUUCUCUCUCUGUAGAGAUGAAGAUAUGACCGGGUGGCGGAGGGAUGGCGGGGGA .--------....(--------------..((((.(((....((((..((((((((((((((((....)))).).)))...)))))))))))).....)))))))..). ( -35.20) >consensus A________UAUAUUUU_UUU__AGUAUUUCCGCGCGUAAAGCGCCAAACCUGGUUUCUCUCUCUGUAGAGAUGAAGAUAUGACCGGGUGGCGGAGGGAUGGCGGGGGA ...........................(((((((.(((....((((..(((((((((((((((....))))).))......)))))))))))).....)))))))))). (-24.96 = -25.63 + 0.68)
| Location | 2,609,746 – 2,609,855 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 77.36 |
| Mean single sequence MFE | -23.34 |
| Consensus MFE | -15.46 |
| Energy contribution | -15.69 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.66 |
| SVM decision value | 2.53 |
| SVM RNA-class probability | 0.994963 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2609746 109 - 22224390 UCCCCCACCAUCCCUCCGCCACCCGGUCAUAUCUUCAUCUCUACAGAGAGAGAAAAAUAGUUUGGCGCUUUACUCGCGGAAAUACUAAAAAAAAAAUAUCUGUAAGCUU ................(((((..(.......((((..((((....))))))))......)..))))).....((..((((.((............)).))))..))... ( -17.02) >DroSec_CAF1 17704 100 - 1 UUCCCCGCCAUCCCUCCGCCACCCGGUCAUAUUCUCAUCUCUACAGAGAGAGAAACCAGGUUUGGCACUUAACGCGCGGAAAUACUCCAAA-AAAAUAUA--------U ((((.(((.........((((((.(((....(((((.((((....)))))))))))).)))..))).......))).))))..........-........--------. ( -26.69) >DroSim_CAF1 17407 87 - 1 UCCCCCGCCAUCCCUCCGCCACCCGGUCAUAUCUUCAUCUCUACAGAGAGAGAAACCAGGUUUGGCGCUUUAUGCGCGGAA--------------AUAUA--------U ....(((((((.....(((((((.(((....((((..((((....)))))))).))).)))..))))....))).))))..--------------.....--------. ( -26.30) >consensus UCCCCCGCCAUCCCUCCGCCACCCGGUCAUAUCUUCAUCUCUACAGAGAGAGAAACCAGGUUUGGCGCUUUACGCGCGGAAAUACU__AAA_AAAAUAUA________U ....((((........(((((..(((......))((.(((((....)))))))......)..)))))........)))).............................. (-15.46 = -15.69 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:39 2006