Locus 931

Sequence ID X_DroMel_CAF1
Location 2,598,871 – 2,598,980
Length 109
Max. P 0.773057
window1517

overview

Window 7

Location 2,598,871 – 2,598,980
Length 109
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 88.35
Mean single sequence MFE -32.07
Consensus MFE -26.90
Energy contribution -26.98
Covariance contribution 0.09
Combinations/Pair 1.11
Mean z-score -2.02
Structure conservation index 0.84
SVM decision value 0.53
SVM RNA-class probability 0.773057
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2598871 109 + 22224390
UGAACUCCGUGGUUCCACUGUACACGUUCAAAAGCAGUGAACCGUUCGACGACGAGUUCGAC---GAGUUCGUGCUCAAUGAGCGCUGGAAUUAGUACAGCAAAAAUGAGAA
.((((((...(((((.(((((............))))))))))(((.(((.....))).)))---))))))..((((...))))((((.........))))........... ( -33.10)
>DroSec_CAF1 7031 108 + 1
UGAACUCCGUGGUUCCACUGUACACGUUCAAAAGCAGUGAACCGUUCGACGACGAGUUCGAC---GAGUUCGUGCUCAAUGAGCGCUGGAAUUAGUACAGCAAAAAUAAGA-
.((((((...(((((.(((((............))))))))))(((.(((.....))).)))---))))))..((((...))))((((.........))))..........- ( -33.10)
>DroSim_CAF1 7075 108 + 1
UGAACUCCGUGGUUCCACUGUACACGUUCAAAAGCAGUGAACCGUUCGACGACGAGUUCGAC---GAGUUCGUGCUCAAUGAGCGCUGGAAUUAGUACAGCAAAAAUAAGA-
.((((((...(((((.(((((............))))))))))(((.(((.....))).)))---))))))..((((...))))((((.........))))..........- ( -33.10)
>DroEre_CAF1 7817 108 + 1
UGAACUCCGUGGUUCCACUGUACACGUUUAAAAGCAGUGAACCGUUCGACGACGAGUUCGAC---GAGUUCGUGCUCAAUGAGCGCUGGAAUUAACACAACAAAAAUGAAC-
.((((((...(((((.(((((............))))))))))(((.(((.....))).)))---))))))((((((...)))))).........................- ( -31.20)
>DroYak_CAF1 7322 108 + 1
UGAACUCCGUGGUUCCACUGUACACGUUCAAAAGCAGUGAACCGUUCGACGACGAGUUCGAC---GAGUUCGUGCUCAAUGAGCGCUGGAAUUAAGACAGCAAAAAUGUAC-
........(((....))).(((((.(((((..((((.(((((((((.(((.....))).)))---).)))))))))...)))))((((.........)))).....)))))- ( -34.00)
>DroAna_CAF1 8639 110 + 1
CGAACUCCGUGGUUCCACUGUACACAUUAACAAACAGUGAACCAUUUGACGAAGAAUUCGAGUUGGAGCUCGUGCUCAGUGUUCGCUAAAAAAAUCACA-CAGACACAAAA-
.((.(((((((((((.(((((............))))))))))))....(((.....)))....)))).))(((.((.((((..............)))-).)))))....- ( -27.94)
>consensus
UGAACUCCGUGGUUCCACUGUACACGUUCAAAAGCAGUGAACCGUUCGACGACGAGUUCGAC___GAGUUCGUGCUCAAUGAGCGCUGGAAUUAGUACAGCAAAAAUAAAA_
.((((((..((((((.(((((............))))))))))).((((........))))....))))))((((((...)))))).......................... (-26.90 = -26.98 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:30 2006