Locus 930

Sequence ID X_DroMel_CAF1
Location 2,596,052 – 2,596,169
Length 117
Max. P 0.945543
window1516

overview

Window 6

Location 2,596,052 – 2,596,169
Length 117
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 78.61
Mean single sequence MFE -35.66
Consensus MFE -21.15
Energy contribution -22.53
Covariance contribution 1.38
Combinations/Pair 1.31
Mean z-score -2.35
Structure conservation index 0.59
SVM decision value 1.35
SVM RNA-class probability 0.945543
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2596052 117 + 22224390
GCGGUAAUUUGGCGUUUUCAAUGGCGCGCGAAAUAUGUUUGUGUGUAUAGAAUGUGCGCGCUAAAAUCCGCAUUUACAUAUGUAUGUAUGAACAUACA---CAAUGUGUGUGUUGCGCUA
((((...((((((((.(((....(((((((((.....)))))))))...))).....))))))))..)))).....(((((....)))))((((((((---(...)))))))))...... ( -38.20)
>DroSec_CAF1 4865 116 + 1
GCGGUAAUUUUGCGUUUUCAAUCGCGCGCGAAAAAUGUUUGUGUGUAUAGAAUGUGCGCCCUAAAAUCCGCACUUACAUAUGUAU----GUAUGUGUAUGUUAAUGUGUGUGUUGCGCUA
(((........((((.(((.((.(((((((((.....))))))))))).)))...)))).....((..(((((..(((((..((.----...))..)))))....)))))..)).))).. ( -31.70)
>DroSim_CAF1 4870 120 + 1
GCGGUAAUUUUGCGUUUUCGAUCGCGCGCGAAAAAUGCUUGUGUGUAUUGAAAAUGCGCCCUAAAAUCCGCAUUUACAUAUGUAUGUAUGUAUGUGCAUGUUAAUGUGUGUGUUGCGCUA
((((......((((((((((((.((((((((.......)))))))))))))))))))).........))(((..(((((((.(((((((....)))))))...)))))))...))))).. ( -39.36)
>DroYak_CAF1 4992 113 + 1
GCGGUAGAUUUGCGUUUUCACUCGCGCGCAAAAUAUGUUUGUAUGUAUAGCAUCUGCAUG-UAACAUCCAUGUUGGCGUAUGUAUGUUUGU----G--UGCAAGUGUGUGUAUUCCGCCA
..((..((..((((....((((.(((((((((........((((((((.((....(((((-.......)))))..)))))))))).)))))----)--))).))))..)))).))..)). ( -33.40)
>consensus
GCGGUAAUUUUGCGUUUUCAAUCGCGCGCGAAAAAUGUUUGUGUGUAUAGAAUGUGCGCCCUAAAAUCCGCAUUUACAUAUGUAUGUAUGUAUGUGCAUGUUAAUGUGUGUGUUGCGCUA
(((........(((..(((....(((((((((.....)))))))))...)))..))).......(((.(((((....(((((((((......)))))))))....))))).))).))).. (-21.15 = -22.53 +   1.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:29 2006